Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_J06
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 105 3e-23
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 105 3e-23
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 95 3e-20
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 49 2e-06
12_02_0510 + 19846834-19848100,19848114-19848391 30 1.2
12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987... 30 1.2
12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747 28 6.3
03_02_0649 - 10162202-10162366,10162455-10162533,10162614-101626... 28 6.3
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 27 8.3
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 105 bits (252), Expect = 3e-23
Identities = 48/58 (82%), Positives = 52/58 (89%)
Frame = +3
Query: 309 PXDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPXS 482
P DGCLN IE NDE L+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P S
Sbjct: 85 PNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
Score = 99.5 bits (237), Expect = 2e-21
Identities = 43/57 (75%), Positives = 51/57 (89%)
Frame = +2
Query: 137 KAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 307
K+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFV
Sbjct: 29 KSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFV 84
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 105 bits (252), Expect = 3e-23
Identities = 48/58 (82%), Positives = 52/58 (89%)
Frame = +3
Query: 309 PXDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPXS 482
P DGCLN IE NDE L+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P S
Sbjct: 255 PNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 104 bits (249), Expect = 6e-23
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +3
Query: 309 PXDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 476
P DGCLN IE NDE L+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 85 PNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 140
Score = 99.5 bits (237), Expect = 2e-21
Identities = 43/57 (75%), Positives = 51/57 (89%)
Frame = +2
Query: 137 KAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 307
K+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFV
Sbjct: 29 KSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFV 84
Score = 99.5 bits (237), Expect = 2e-21
Identities = 43/57 (75%), Positives = 51/57 (89%)
Frame = +2
Query: 137 KAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 307
K+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFV
Sbjct: 199 KSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFV 254
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 95.5 bits (227), Expect = 3e-20
Identities = 42/57 (73%), Positives = 49/57 (85%)
Frame = +2
Query: 137 KAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 307
K+H G +WK PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL+KNGKK+ AFV
Sbjct: 100 KSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLVKNGKKIAAFV 155
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 94 TTAREQRWADKEFNESPHGYEMEG*PFRWCISRKG 198
T R QRWADK + +S G E + PF KG
Sbjct: 86 THRRNQRWADKAYKKSHFGNEWKK-PFAGSSHAKG 119
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +3
Query: 345 DEXLVAGFGRKGHAVGDIPGVRFKVVK 425
DE L++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>12_02_0510 + 19846834-19848100,19848114-19848391
Length = 514
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 110 SDGRTKNSTKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV 268
++GR +++T + T+ A P G K ++E +GVEA +S + C V
Sbjct: 168 NEGRIQDTTNRNETTRVLATPVFGRQKEKDEIIEWLGVEAPGRDSKLSVCAIV 220
>12_02_0506 -
19794383-19794670,19795066-19795140,19795337-19798704,
19799503-19799671,19799758-19799850
Length = 1330
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 110 SDGRTKNSTKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV 268
++GR +++T + T+ A P G K ++E +GVEA +S + C V
Sbjct: 259 NEGRIQDTTNRNETTRVLATPVFGRQKEKDEIIEWLGVEAPGRDSKLSVCAIV 311
>12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747
Length = 180
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +2
Query: 65 GNTNGA*AREPPLVNSDGRTKNSTKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNS 244
G+ G A +P + G N + KW AN GG IVL + + ++ PNS
Sbjct: 19 GDGQGIAAADPGRLAWHGSRDNDKRQR---KWAAN-LGGTPPGSCIVLLHISLLSRVPNS 74
Query: 245 AIRKC 259
A + C
Sbjct: 75 APKFC 79
>03_02_0649 -
10162202-10162366,10162455-10162533,10162614-10162670,
10162741-10162847,10163365-10163580,10163690-10163734,
10164100-10164258,10164714-10164818,10164902-10165084,
10165490-10165546,10165625-10165720,10166970-10167104,
10167188-10167262,10167380-10167479,10167682-10167842,
10167921-10168068,10168706-10169111,10169794-10169860,
10169953-10170162,10170570-10170711,10170809-10170870,
10170965-10171037,10171876-10171985,10172087-10172227
Length = 1032
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -2
Query: 115 IAVHERWFTCLRAVR-IACGVYPVLDSTT 32
+ ++ERW CL+ +R + C Y DSTT
Sbjct: 217 LLIYERWLVCLKIIRELICSGY-ASDSTT 244
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -1
Query: 149 PCGLSLNSLSAHRCSRAVVHVLTRRSYCLRGLPSVG*HYTKSATGV 12
PC S L AHRC V L+ R LR L G +A+G+
Sbjct: 98 PCLWSALDLRAHRCDAEVASSLSSRCGSLRRLRLRGHEAAAAASGL 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,321,138
Number of Sequences: 37544
Number of extensions: 384801
Number of successful extensions: 883
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -