Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J06
         (584 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              113   1e-25
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              109   2e-24
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         33   0.23 
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    29   3.7  
SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6)               27   8.5  
SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)                        27   8.5  

>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  113 bits (272), Expect = 1e-25
 Identities = 53/57 (92%), Positives = 55/57 (96%)
 Frame = +2

Query: 137 KAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 307
           KAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK+TAFV
Sbjct: 28  KAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFV 84



 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 25/33 (75%), Positives = 30/33 (90%)
 Frame = +3

Query: 309 PXDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGV 407
           P DGCLN+IE NDE L++GFGR+GHAVGDIPG+
Sbjct: 85  PNDGCLNYIEENDEVLISGFGRRGHAVGDIPGI 117


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score =  109 bits (261), Expect = 2e-24
 Identities = 49/58 (84%), Positives = 54/58 (93%)
 Frame = +3

Query: 309 PXDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPXS 482
           P DGCLN+IE NDE L++GFGR+GHAVGDIPGVRFKVVKVANVSLLAL+KEKKERP S
Sbjct: 86  PNDGCLNYIEENDEVLISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKKERPRS 143



 Score = 64.1 bits (149), Expect = 8e-11
 Identities = 29/33 (87%), Positives = 32/33 (96%)
 Frame = +2

Query: 209 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 307
           ++ GVEAKQPNSAIRKCVRVQLIKNGKK+TAFV
Sbjct: 53  QEPGVEAKQPNSAIRKCVRVQLIKNGKKITAFV 85


>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/38 (39%), Positives = 26/38 (68%)
 Frame = +2

Query: 194 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 307
           KG+ ++    + K+PNSA RKC  ++L  NGK ++A++
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGKTISAYI 266


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 139 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 237
           S HG  MEG P  W +S  G  P+ S C S +A
Sbjct: 85  SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +1

Query: 55   KPRRQYERRVST*TTAREQRWADKEFNESPHGYEMEG*PFRWCISRKGHRPRESWCR 225
            +PR+  ERR    +   + R  D+     P  YE      R    RKG RPRE + R
Sbjct: 1598 EPRQGTERRREP-SLRHDDRHEDRRSEGRPEDYERRDEERRREAERKGERPREEFER 1653


>SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6)
          Length = 294

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 307 DECGHFLSVLNELYTDAFADGRVGLLSFYTNFLED 203
           D+   F    NE      AD R GL+    NF+ED
Sbjct: 114 DKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 148


>SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)
          Length = 471

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 307 DECGHFLSVLNELYTDAFADGRVGLLSFYTNFLED 203
           D+   F    NE      AD R GL+    NF+ED
Sbjct: 163 DKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,696,912
Number of Sequences: 59808
Number of extensions: 442385
Number of successful extensions: 803
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)