Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J06
         (584 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S...   114   2e-25
CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.               114   2e-25
BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23 p...   114   2e-25
AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23 p...   108   2e-23
Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal p...    38   0.026
CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.               38   0.026
BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal...    38   0.026
BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal...    38   0.026
BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal...    38   0.026
AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12 p...    38   0.026
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.     30   6.9  

>D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S28
           homologue protein.
          Length = 143

 Score =  114 bits (274), Expect = 2e-25
 Identities = 54/61 (88%), Positives = 56/61 (91%)
 Frame = +2

Query: 125 KNSTKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAF 304
           K   KAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK+TAF
Sbjct: 25  KQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAF 84

Query: 305 V 307
           V
Sbjct: 85  V 85



 Score =  109 bits (262), Expect = 7e-24
 Identities = 52/58 (89%), Positives = 52/58 (89%)
 Frame = +3

Query: 309 PXDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPXS 482
           P DGCLN IE NDE LVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERP S
Sbjct: 86  PNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143


>CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.
          Length = 143

 Score =  114 bits (274), Expect = 2e-25
 Identities = 54/61 (88%), Positives = 56/61 (91%)
 Frame = +2

Query: 125 KNSTKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAF 304
           K   KAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK+TAF
Sbjct: 25  KQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAF 84

Query: 305 V 307
           V
Sbjct: 85  V 85



 Score =  109 bits (262), Expect = 7e-24
 Identities = 52/58 (89%), Positives = 52/58 (89%)
 Frame = +3

Query: 309 PXDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPXS 482
           P DGCLN IE NDE LVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERP S
Sbjct: 86  PNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143


>BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23
           protein.
          Length = 143

 Score =  114 bits (274), Expect = 2e-25
 Identities = 54/61 (88%), Positives = 56/61 (91%)
 Frame = +2

Query: 125 KNSTKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAF 304
           K   KAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK+TAF
Sbjct: 25  KQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAF 84

Query: 305 V 307
           V
Sbjct: 85  V 85



 Score =  109 bits (262), Expect = 7e-24
 Identities = 52/58 (89%), Positives = 52/58 (89%)
 Frame = +3

Query: 309 PXDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPXS 482
           P DGCLN IE NDE LVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERP S
Sbjct: 86  PNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143


>AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23
           protein.
          Length = 59

 Score =  108 bits (259), Expect = 2e-23
 Identities = 51/56 (91%), Positives = 51/56 (91%)
 Frame = +3

Query: 309 PXDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 476
           P DGCLN IE NDE LVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERP
Sbjct: 3   PNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERP 58


>Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 precursor protein.
          Length = 138

 Score = 37.9 bits (84), Expect = 0.026
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +2

Query: 161 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 307
           K  P  G    KG+VL     + K+PNSA RKC RV+L   G++   F+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFI 95


>CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.
          Length = 138

 Score = 37.9 bits (84), Expect = 0.026
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +2

Query: 161 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 307
           K  P  G    KG+VL     + K+PNSA RKC RV+L   G++   F+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFI 95


>BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 37.9 bits (84), Expect = 0.026
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +2

Query: 161 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 307
           K  P  G    KG+VL     + K+PNSA RKC RV+L   G++   F+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFI 95


>BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 37.9 bits (84), Expect = 0.026
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +2

Query: 161 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 307
           K  P  G    KG+VL     + K+PNSA RKC RV+L   G++   F+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFI 95


>BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 37.9 bits (84), Expect = 0.026
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +2

Query: 161 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 307
           K  P  G    KG+VL     + K+PNSA RKC RV+L   G++   F+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFI 95


>AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12
           protein.
          Length = 138

 Score = 37.9 bits (84), Expect = 0.026
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +2

Query: 161 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 307
           K  P  G    KG+VL     + K+PNSA RKC RV+L   G++   F+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFI 95


>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
          Length = 1332

 Score = 29.9 bits (64), Expect = 6.9
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +1

Query: 139 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AAQLCHPQMRPC 267
           SPHG +M G P          RP ES+C         PQ RPC
Sbjct: 37  SPHGPDMSG-PLEGADGGGDPRPGESFCPGGVPSPGPPQHRPC 78


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,837,568
Number of Sequences: 237096
Number of extensions: 2085908
Number of successful extensions: 9038
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9038
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)