Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J06
         (584 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...   106   9e-24
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...   106   9e-24
At3g07270.2 68416.m00865 GTP cyclohydrolase I identical to GTP c...    30   1.3  
At3g07270.1 68416.m00866 GTP cyclohydrolase I identical to GTP c...    30   1.3  
At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to ...    29   2.3  

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score =  106 bits (255), Expect = 9e-24
 Identities = 48/58 (82%), Positives = 53/58 (91%)
 Frame = +3

Query: 309 PXDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPXS 482
           P DGCLN+IE NDE L+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P S
Sbjct: 85  PNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142



 Score =  101 bits (243), Expect = 3e-22
 Identities = 46/68 (67%), Positives = 54/68 (79%)
 Frame = +2

Query: 104 VNSDGRTKNSTKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKN 283
           +N     K   K+H+G +WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKN
Sbjct: 18  INQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKN 76

Query: 284 GKKVTAFV 307
           GKK+ AFV
Sbjct: 77  GKKIAAFV 84


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score =  106 bits (255), Expect = 9e-24
 Identities = 48/58 (82%), Positives = 53/58 (91%)
 Frame = +3

Query: 309 PXDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPXS 482
           P DGCLN+IE NDE L+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P S
Sbjct: 85  PNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142



 Score = 93.5 bits (222), Expect = 9e-20
 Identities = 43/61 (70%), Positives = 51/61 (83%)
 Frame = +2

Query: 125 KNSTKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAF 304
           K+  K++ G +WK  PF  +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AF
Sbjct: 25  KHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 83

Query: 305 V 307
           V
Sbjct: 84  V 84


>At3g07270.2 68416.m00865 GTP cyclohydrolase I identical to GTP
           cyclohydrolase I GI:19909132 from [Arabidopsis
           thaliana]; contains Pfam profile: PF01227 GTP
           cyclohydrolase I
          Length = 466

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +2

Query: 32  CSAIQHWVNPAG 67
           CSA+QHWV PAG
Sbjct: 166 CSALQHWVKPAG 177


>At3g07270.1 68416.m00866 GTP cyclohydrolase I identical to GTP
           cyclohydrolase I GI:19909132 from [Arabidopsis
           thaliana]; contains Pfam profile: PF01227 GTP
           cyclohydrolase I
          Length = 466

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +2

Query: 32  CSAIQHWVNPAG 67
           CSA+QHWV PAG
Sbjct: 166 CSALQHWVKPAG 177


>At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 289

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 417 VVKVANVSLLALYKEKKERPXS*VYIVISDLLSGSALFI 533
           VV++  +SL   Y  KKE+  +  +++  D+L   A+F+
Sbjct: 80  VVQIVYISLFFFYAPKKEKTLTVKFVLFVDVLGFGAIFV 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,359,923
Number of Sequences: 28952
Number of extensions: 281305
Number of successful extensions: 532
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)