Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J02
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...   128   3e-31
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...   126   9e-31
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    28   0.59 
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        27   0.79 
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   1.8  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    26   2.4  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    26   2.4  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    25   4.2  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    25   4.2  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   4.2  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    25   5.5  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    24   7.3  
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc...    24   7.3  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    24   9.7  

>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score =  128 bits (309), Expect = 3e-31
 Identities = 55/91 (60%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
 Frame = +3

Query: 45  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 218
           M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG++ +KR+  GIW C  K
Sbjct: 1   MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGK 60

Query: 219 RCKRTVXGGAWVFSTTAASSCRSAVRRLREV 311
            CK+ + GGAW  +T AA+S RS +RRLRE+
Sbjct: 61  GCKKVLAGGAWTVTTAAATSARSTIRRLREM 91


>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score =  126 bits (305), Expect = 9e-31
 Identities = 55/91 (60%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
 Frame = +3

Query: 45  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 218
           M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG+  +KR+  GIW C  K
Sbjct: 1   MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGK 60

Query: 219 RCKRTVXGGAWVFSTTAASSCRSAVRRLREV 311
            C +T+ GGAW  +T AA+S RS +RRLRE+
Sbjct: 61  GCSKTLAGGAWTVTTAAATSARSTIRRLREM 91


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 17  LLYXERFTNNGQTYQKGWNYW 79
           + Y ER+ +    +  GWNYW
Sbjct: 109 ITYIERYVDASLAFAAGWNYW 129


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 235 TVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTS 131
           T +L ++  Q+ T   F+A + +NE  +FA W TS
Sbjct: 70  TSVLRQVGWQLSTS--FVAHVSENENTFFAIWYTS 102


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 141 QHAKYT-CSFCGKDAMKRSCVGIWSCKRCKR 230
           +H K T C  C +  +K  C  +W C+ CK+
Sbjct: 15  RHRKITSCRECHR--LKLKCDRVWPCENCKK 43


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 176 GCYETFLCRHLVL*AMQEDCXRRSLGILH 262
           G  + +LC+ L +    E C   S+G+LH
Sbjct: 234 GSKDRYLCKDLTVVMTHEPCVMCSMGLLH 262


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 128 LFDHFT*RGTVTCAIFASNSNLFGT 54
           +FD FT    +T  I ASN N FG+
Sbjct: 550 VFDEFTNISNLTSPIEASNGNTFGS 574


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 232 VLLHRLQDQMPTQERFIASLPQNEQV 155
           +L  +L +Q+PT  R  AS+P   QV
Sbjct: 32  LLKQKLTEQLPTTFRITASIPHATQV 57


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 20  LYXERFTNNGQTYQKGWNYWQIWHTL 97
           +Y  R  NN   + + W Y+ IW T+
Sbjct: 136 MYTGRLLNNNIGFAQSWLYFWIWLTV 161


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 93   VCHICQ*FQPFWYVWPLL 40
            + ++ Q FQ  WY WP L
Sbjct: 1251 IVYLVQDFQRLWYHWPFL 1268


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 150 KYTCSFCGKDAMKRSCVGIWSCKRCKR 230
           KY C  CG     + C  I S  RC +
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMK 136


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 87  HICQ*FQPFWYVWPLLVNLSXY 22
           H+C+ F  F+Y  PLL+    Y
Sbjct: 145 HMCRFFSGFFYKHPLLLKYQWY 166


>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 190 RFIASLPQNEQVYFA 146
           RF+ SLPQ E+V FA
Sbjct: 248 RFVQSLPQKEKVPFA 262


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 32  RFTNNGQTYQKGWNYWQIW 88
           R   NG T Q G+  WQ W
Sbjct: 652 RSDGNGNTSQSGFMAWQRW 670


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,425,042
Number of Sequences: 5004
Number of extensions: 28399
Number of successful extensions: 87
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)