Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_J02
         (392 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)         131   2e-31
At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB) si...   124   2e-29
At4g28730.1 68417.m04109 glutaredoxin family protein contains gl...    27   3.4  
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui...    27   6.0  
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui...    27   6.0  
At1g58520.1 68414.m06653 early-responsive to dehydration protein...    27   6.0  

>At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)
          Length = 92

 Score =  131 bits (316), Expect = 2e-31
 Identities = 57/88 (64%), Positives = 68/88 (77%)
 Frame = +3

Query: 45  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 224
           MAKRTKKVGI GKYGTRYGAS+RK +KKMEV+QH+KY C FCGK  +KR  VGIW CK C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60

Query: 225 KRTVXGGAWVFSTTAASSCRSAVRRLRE 308
            +   GGA+  +T +A + RS +RRLRE
Sbjct: 61  GKVKAGGAYTMNTASAVTVRSTIRRLRE 88


>At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB)
           similar to putative 60S ribosomal protein L37a
           GB:AAD28753 [Gossypium hirsutum]
          Length = 92

 Score =  124 bits (299), Expect = 2e-29
 Identities = 55/88 (62%), Positives = 65/88 (73%)
 Frame = +3

Query: 45  MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 224
           M KRTKK  I GKYGTRYGASLRK +KKMEV+QH KY C FCGK ++KR  VGIW CK C
Sbjct: 1   MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 225 KRTVXGGAWVFSTTAASSCRSAVRRLRE 308
            +   GGA+  +T +A + RS +RRLRE
Sbjct: 61  GKVKAGGAYTMNTASAVTVRSTIRRLRE 88


>At4g28730.1 68417.m04109 glutaredoxin family protein contains
           glutaredoxin domain, Pfam:PF00462
          Length = 174

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 75  TGKYGTRYGASLRKMVKKMEVTQHAKYTCSFC 170
           +  +G+R   S+RK V +  V  ++K  CS+C
Sbjct: 62  SSSFGSRMEESIRKTVTENTVVIYSKTWCSYC 93


>At4g38600.2 68417.m05463 HECT-domain-containing protein /
           ubiquitin-transferase family protein similar to
           SP|Q14669Thyroid receptor interacting protein 12
           (TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
           HECT-domain (ubiquitin-transferase)
          Length = 1794

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 250 QAPPXTVLLHRLQDQMPTQERF 185
           + PP TVL+ +LQ+ + + ERF
Sbjct: 802 KVPPMTVLIQKLQNALSSLERF 823


>At4g38600.1 68417.m05464 HECT-domain-containing protein /
           ubiquitin-transferase family protein similar to
           SP|Q14669Thyroid receptor interacting protein 12
           (TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
           HECT-domain (ubiquitin-transferase)
          Length = 1888

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 250 QAPPXTVLLHRLQDQMPTQERF 185
           + PP TVL+ +LQ+ + + ERF
Sbjct: 875 KVPPMTVLIQKLQNALSSLERF 896


>At1g58520.1 68414.m06653 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 657

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +2

Query: 5   FLCQLLYXERFTNNGQT-YQKGWNYWQIWHTLRCLS 109
           FL  L+Y  +  N   T Y+ G  YW I+H     S
Sbjct: 485 FLAYLIYKNQILNVYITKYESGGQYWPIFHNTTIFS 520


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,494,666
Number of Sequences: 28952
Number of extensions: 149351
Number of successful extensions: 427
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)