Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_I24
(532 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23630.1 68417.m03403 reticulon family protein (RTNLB1) weak ... 38 0.003
At5g41600.1 68418.m05054 reticulon family protein (RTNLB4) weak ... 36 0.017
At2g46170.1 68415.m05741 reticulon family protein (RTNLB5) weak ... 36 0.017
At3g61560.1 68416.m06895 reticulon family protein (RTNLB6) conta... 34 0.052
At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak... 34 0.052
At4g11220.1 68417.m01818 reticulon family protein (RTNLB2) simil... 33 0.12
At1g64090.1 68414.m07260 reticulon family protein (RTNLB3) weak ... 33 0.16
At3g10260.3 68416.m01230 reticulon family protein weak similarit... 32 0.28
At3g10260.2 68416.m01229 reticulon family protein weak similarit... 32 0.28
At3g10260.1 68416.m01228 reticulon family protein weak similarit... 32 0.28
At2g15280.1 68415.m01742 reticulon family protein (RTNLB10) low ... 31 0.64
At4g01230.1 68417.m00162 reticulon family protein (RTNLB7) weak ... 29 2.6
At3g10915.2 68416.m01315 reticulon family protein low similarity... 27 6.0
At3g10915.1 68416.m01314 reticulon family protein low similarity... 27 6.0
>At4g23630.1 68417.m03403 reticulon family protein (RTNLB1) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251; contains Pfam profile PF02453: Reticulon
Length = 275
Score = 38.3 bits (85), Expect = 0.003
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 438 LWCLTYVGACFNGITLIILGWIALFTLPNAY 530
LW L+ +G CFN +TL + + LFT+P AY
Sbjct: 201 LWVLSILGGCFNFLTLAYIALVLLFTVPLAY 231
>At5g41600.1 68418.m05054 reticulon family protein (RTNLB4) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251, SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 257
Score = 35.9 bits (79), Expect = 0.017
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 438 LWCLTYVGACFNGITLIILGWIALFTLPNAY 530
LW L+ +G+C+N +TL + LFT+P Y
Sbjct: 180 LWVLSIIGSCYNFLTLFYTATVLLFTIPVLY 210
>At2g46170.1 68415.m05741 reticulon family protein (RTNLB5) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251; contains Pfam profile PF02453: Reticulon
Length = 255
Score = 35.9 bits (79), Expect = 0.017
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 381 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPNAY 530
LR + L DL L V LW ++ VG FN +TL+ + ++ L T+P Y
Sbjct: 161 LRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLY 210
>At3g61560.1 68416.m06895 reticulon family protein (RTNLB6) contains
Pfam profile PF02453: Reticulon
Length = 253
Score = 34.3 bits (75), Expect = 0.052
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 381 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPNAY 530
LR + L DL L LW ++ VG FN +TL+ + ++ L T+P Y
Sbjct: 161 LRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLY 210
>At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak
similarity to neuroendocrine-specific protein C [Homo
sapiens] GI:307311; identical to cDNA RTNLB11
GI:32331878
Length = 200
Score = 34.3 bits (75), Expect = 0.052
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 420 LKFGVLLWCLTYVGACFNGITLIILGWIALFTLPNAY 530
L+ ++LW ++YVG N +TL+ +G + + P Y
Sbjct: 128 LQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVY 164
>At4g11220.1 68417.m01818 reticulon family protein (RTNLB2) similar
to SP|Q64548 Reticulon 1 (Neuroendocrine-specific
protein) {Rattus norvegicus}; contains Pfam profile
PF02453: Reticulon
Length = 271
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 381 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPNAY 530
LR + D+ L LW L+ +G C++ +TL + + LFT+P Y
Sbjct: 178 LREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFY 227
>At1g64090.1 68414.m07260 reticulon family protein (RTNLB3) weak
similarity to SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 255
Score = 32.7 bits (71), Expect = 0.16
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 438 LWCLTYVGACFNGITLIILGWIALFTLPNAY 530
LW L+ VG+ N +TLI + + LFT+P Y
Sbjct: 176 LWVLSKVGSSCNFLTLIYIATVLLFTIPVLY 206
>At3g10260.3 68416.m01230 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 267
Score = 31.9 bits (69), Expect = 0.28
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 438 LWCLTYVGACFNGITLIILGWIALFTLPNAY 530
LW VG+C N +T++ +G++ T+P Y
Sbjct: 193 LWVAAMVGSCCNFLTVLYIGFVGAHTMPVLY 223
>At3g10260.2 68416.m01229 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 247
Score = 31.9 bits (69), Expect = 0.28
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 438 LWCLTYVGACFNGITLIILGWIALFTLPNAY 530
LW VG+C N +T++ +G++ T+P Y
Sbjct: 173 LWVAAMVGSCCNFLTVLYIGFVGAHTMPVLY 203
>At3g10260.1 68416.m01228 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 247
Score = 31.9 bits (69), Expect = 0.28
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 438 LWCLTYVGACFNGITLIILGWIALFTLPNAY 530
LW VG+C N +T++ +G++ T+P Y
Sbjct: 173 LWVAAMVGSCCNFLTVLYIGFVGAHTMPVLY 203
>At2g15280.1 68415.m01742 reticulon family protein (RTNLB10) low
similarity to neuroendocrine-specific protein C [Homo
sapiens] GI:307311, SP|Q64548 Reticulon 1
(Neuroendocrine-specific protein) {Rattus norvegicus};
contains Pfam profile PF02453: Reticulon
Length = 201
Score = 30.7 bits (66), Expect = 0.64
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +3
Query: 384 RRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPNAY 530
R +++ + + V+LW +++VG N +T++ LG + +P Y
Sbjct: 108 REIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLY 156
>At4g01230.1 68417.m00162 reticulon family protein (RTNLB7) weak
similarity to SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 242
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/50 (24%), Positives = 29/50 (58%)
Frame = +3
Query: 381 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPNAY 530
LR + L D+ + + + LW ++ +G F+ ++L+ + ++ + T+P Y
Sbjct: 158 LRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLY 207
>At3g10915.2 68416.m01315 reticulon family protein low similarity to
rS-Rex-s [Rattus norvegicus] GI:1143717,
neuroendocrine-specific protein C [Homo sapiens]
GI:307311; contains Pfam profile PF02453: Reticulon
Length = 226
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 423 KFGVLLWCLTYVGACFNGITLIILGWIALFTLPNAY 530
K + LW L+ +G+ + TL+ +G I T+P Y
Sbjct: 148 KVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALY 183
>At3g10915.1 68416.m01314 reticulon family protein low similarity to
rS-Rex-s [Rattus norvegicus] GI:1143717,
neuroendocrine-specific protein C [Homo sapiens]
GI:307311; contains Pfam profile PF02453: Reticulon
Length = 220
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 423 KFGVLLWCLTYVGACFNGITLIILGWIALFTLPNAY 530
K + LW L+ +G+ + TL+ +G I T+P Y
Sbjct: 142 KVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALY 177
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,070,326
Number of Sequences: 28952
Number of extensions: 81573
Number of successful extensions: 361
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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