Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_I22
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.2  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -1

Query: 477  FAYNVLKTKTYKQFARLQXISQTLXSRVYFD--NKLEAGSSIAXQFDVDEVKAQSSSGD 307
            F +N      YK   R+      + + + FD  N+L++G+  A  +D+  +++  S  D
Sbjct: 1912 FVFNCDNAFNYKTIQRILSGLAQIGTYICFDEFNRLDSGTLSAISYDIQRIQSLVSHSD 1970



 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 157  VRKVHEQSVEANAIPLFKRVQEVFFEFP 240
            +R+V   S+    IPLF + +E +F FP
Sbjct: 2094 IREVLYPSLIYQDIPLFFKAEESYFNFP 2121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,939,013
Number of Sequences: 5004
Number of extensions: 35822
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)