Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_I22
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1648| Best HMM Match : UPF0061 (HMM E-Value=5.2e-10)                27   6.9  
SB_49173| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_14030| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)                   27   9.1  

>SB_1648| Best HMM Match : UPF0061 (HMM E-Value=5.2e-10)
          Length = 371

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 237 PSAGAEDQGHRYKGPREWLGRAVDHPRRIGL*LRQHQTEXR*RIRL 374
           P A A ++  + K  R+WLGR  +   R G     H T+ + RIR+
Sbjct: 262 PGAWALEEAQQQKNWRDWLGRYQERLGRNG----GHDTDEKRRIRM 303


>SB_49173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 335 KLKPNPPRVIDGSAKPFSRSFIAMPLIFCSG*G 237
           K KPNP   +D S  P+ R  +A     CS  G
Sbjct: 35  KAKPNPIPPVDSSGGPYYRGAVAADAKNCSAIG 67


>SB_14030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 335 KLKPNPPRVIDGSAKPFSRSFIAMPLIFCSG*G 237
           K KPNP   +D S  P+ R  +A     CS  G
Sbjct: 195 KAKPNPIPPVDSSGGPYYRGAVAADAKNCSAIG 227


>SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)
          Length = 1216

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 305 DGSAKPFSRSFIAMPLI 255
           DGSAKP +RSF++ P +
Sbjct: 521 DGSAKPATRSFVSSPYL 537


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,493,140
Number of Sequences: 59808
Number of extensions: 275378
Number of successful extensions: 566
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)