Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_I22
         (513 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40890.1 68415.m05046 cytochrome P450 98A3, putative (CYP98A3...    32   0.26 
At3g21130.1 68416.m02670 F-box family protein contains Pfam prof...    29   1.4  
At1g08710.1 68414.m00967 F-box family protein similar to ESTs gb...    27   5.6  
At1g04930.1 68414.m00490 hydroxyproline-rich glycoprotein family...    27   7.4  
At5g59490.1 68418.m07456 haloacid dehalogenase-like hydrolase fa...    27   9.8  
At4g38530.1 68417.m05454 phosphoinositide-specific phospholipase...    27   9.8  
At2g40060.1 68415.m04922 expressed protein                             27   9.8  

>At2g40890.1 68415.m05046 cytochrome P450 98A3, putative (CYP98A3)
           identical to Cytochrome P450 98A3 (SP|O22203)
           [Arabidopsis thaliana]; similar to gi:17978651 from
           Pinus taeda
          Length = 508

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 214 VQEVFFEFPQPEQKIKGIAIKDLENGLAEPSITRGGLGFNFVNIK-LXSDRGSGFKFVI 387
           V+ VF +   PE + KG+ ++     +A  +ITR   G  F+N + +  ++G  FK ++
Sbjct: 151 VESVFRDCNLPENRAKGLQLRKYLGAVAFNNITRLAFGKRFMNAEGVVDEQGLEFKAIV 209


>At3g21130.1 68416.m02670 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 367

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 198 SFVQEGAGGILRIPSAGAEDQGHRYKGPREWLGRAVDHP 314
           S++ +G  G L IPS G   +G   KG   WL    D P
Sbjct: 189 SWLVDGVAGGLFIPSIGTRRRGLSVKGNTYWLALTEDGP 227


>At1g08710.1 68414.m00967 F-box family protein similar to ESTs
           gb|T22270 and gb|T76886 ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 274

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 154 VVRKVHEQSVEANAIPLFKRVQEVFFEFPQPEQKIKGI 267
           VVR   +Q VE NA+P+  R++ +  E    +Q+I G+
Sbjct: 150 VVRGRQKQMVEQNAVPVEGRLRALEMEMKLCKQQIMGL 187


>At1g04930.1 68414.m00490 hydroxyproline-rich glycoprotein family
           protein Common family member: At2g32840 [Arabidopsis
           thaliana]
          Length = 332

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = +1

Query: 160 RKVHEQSVEANAIPLFKRVQE---VFFEFPQPEQKIKGIAIKDLENGLAEPSITRGGL 324
           +  +  ++ A++IP+ +++Q+   V + F  P    +G + + +   +A+PS+T G L
Sbjct: 66  QSAYSNNLYAHSIPVRRQIQDPSAVLYPFALPG---RGFSARPVRGFVADPSVTAGNL 120


>At5g59490.1 68418.m07456 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|P53078 SSM1 protein
           {Saccharomyces cerevisiae}; contains InterPro accession
           IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 266

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 419 FHRHYXHAYISITNLKPDPLSLFSLML 339
           +HR Y H  +   NLKPDP+ L SL+L
Sbjct: 82  YHR-YVHGRLPYENLKPDPV-LRSLLL 106


>At4g38530.1 68417.m05454 phosphoinositide-specific phospholipase C
           nearly identical to phosphoinositide-specific
           phospholipase C GI:557880 from [Arabidopsis thaliana];
           contains Pfam profile: PF00388
           phosphatidylinositol-specific phospholipase C
          Length = 526

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 202 LFKRVQEVFFEFPQPEQKIKG 264
           LF+RV E F  FP PE+ +KG
Sbjct: 186 LFRRVSESFKHFPSPEE-LKG 205


>At2g40060.1 68415.m04922 expressed protein
          Length = 258

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 374 KPDPLSLFSLMLTKLKPNPPRVIDGSAKPFSRSFIAMP 261
           KP  L+    +L KLK NPP  +  +++P S    A P
Sbjct: 206 KPTDLTRMRQILVKLKHNPPSHLKLTSQPPSEEAAAPP 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,099,695
Number of Sequences: 28952
Number of extensions: 195409
Number of successful extensions: 459
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)