Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_I21
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.8  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   5.1  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    26   5.1  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    25   6.7  

>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 506 VRLYAAVIVQYY-GDVVIEDHQPLSQNRYDVXLCG*LFEVKLVSV 375
           VRLY  + + YY  DV+++  QP+ +  +D  L      + LVSV
Sbjct: 471 VRLYYNIEIAYYFTDVLLKWFQPIIRYEFDNALIFYKASISLVSV 515


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 473 NIAQSPPRXAEHKPEIIDAXPEAESEIS 556
           NIAQS PR +    + +   PEA+ E S
Sbjct: 459 NIAQSGPRSSYFPKKTVSPKPEAKKEAS 486


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 223 SRCTLNACRLCW*DIHLASVF 161
           SRC LNAC++   +  LA +F
Sbjct: 255 SRCPLNACKIAGQETELADLF 275


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 329 MMTFLVHSQAFFQICIAELSPFASRSHLFHFLSELLPLY 213
           ++ F   +    Q+C+A LS + +   + HFL E L  +
Sbjct: 11  LLRFFESAHFTSQLCVAYLSRYPNNIGIHHFLCEKLATF 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,433
Number of Sequences: 5004
Number of extensions: 40328
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)