Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_I21
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27494| Best HMM Match : MFAP1_C (HMM E-Value=0)                     41   0.001
SB_42017| Best HMM Match : DUF1421 (HMM E-Value=0.43)                  30   1.8  
SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)                29   4.1  
SB_7123| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  

>SB_27494| Best HMM Match : MFAP1_C (HMM E-Value=0)
          Length = 808

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 26/75 (34%), Positives = 38/75 (50%)
 Frame = +2

Query: 248 GEISMQKVKVQRYISGKKPDYAQGMXXXXXXXXXXFIXQQRPERKQVLPQIITRKEXHHS 427
           GEI+M+KVKV RY++GK+P+YA+            F         QVL      ++   +
Sbjct: 113 GEITMEKVKVTRYVAGKRPEYAKYSSDEEDVDMEVFTG-------QVLGGQTDDQDLEQA 165

Query: 428 DSEKEVDDPRLRRLR 472
             + E  D RLRRL+
Sbjct: 166 FEQAEKTDRRLRRLQ 180


>SB_42017| Best HMM Match : DUF1421 (HMM E-Value=0.43)
          Length = 565

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 413 EXHHSDSEKE-VDDPRLRRLRNIAQSPPRXAEHKPEIIDAXPEAESEISDH 562
           E + S+ EK+ + D +L      AQ   R A+HK E+ D   + +  ++DH
Sbjct: 30  ERYTSEEEKQRLADHKLELADLDAQEKQRLADHKLELADLDAQEKQRLADH 80


>SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)
          Length = 594

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 322 HSLCIVRLFSRYVSLNFHLLHRDLTFFISYRNCSRCTLNACRLC 191
           H+     + S Y ++N HL  ++    IS  NC+ C   A R+C
Sbjct: 256 HTNLXDEVISDYENINKHLASQEDYLSISIENCNSCVKFAERVC 299


>SB_7123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +2

Query: 371 PERKQVLPQIITRKEXHHSDSEKEVDDPRLRRLRN 475
           P+ K VLP +   K    S SE  V  PRLRRLR+
Sbjct: 201 PKGKVVLPNVPLTKTPSTS-SEDSVHTPRLRRLRS 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,388,051
Number of Sequences: 59808
Number of extensions: 285250
Number of successful extensions: 572
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)