BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_I21 (623 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 30 1.1 At2g20300.1 68415.m02371 protein kinase family protein contains ... 29 3.3 At3g23070.1 68416.m02908 expressed protein contains Pfam domain,... 27 7.7 >At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing protein low similarity to splicing factor SC35 [Arabidopsis thaliana] GI:9843653; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 261 Score = 30.3 bits (65), Expect = 1.1 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +2 Query: 407 RKEXHHSDSEKEVDDPRLRRLRNIAQSPPRXAEHKP 514 +++ HHSD E+ DD R ++A PP +H+P Sbjct: 3 KRKIHHSDDEE--DDTFYYRYSSVAAPPPSNPKHQP 36 >At2g20300.1 68415.m02371 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 744 Score = 28.7 bits (61), Expect = 3.3 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%) Frame = -1 Query: 329 MMTFLVHSQAFFQICIAELSPFA-----SRSHLFHFLSELL 222 ++ L+HS A F IC A L P + S++H HF L Sbjct: 9 LLILLLHSLASFPICFARLFPMSLPFTRSKAHQMHFFHPYL 49 >At3g23070.1 68416.m02908 expressed protein contains Pfam domain, PF04581: Protein of unknown function (DUF578) Length = 881 Score = 27.5 bits (58), Expect = 7.7 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +2 Query: 374 ERKQVLPQIITRKEXHHSDSEKEVDDPRLRRLRNI 478 E+K++ + +KE +S +E + + LRRLRN+ Sbjct: 198 EKKELEAEWTAKKENRYSLAEMTLPESELRRLRNL 232 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,681,395 Number of Sequences: 28952 Number of extensions: 197030 Number of successful extensions: 410 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 405 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 410 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1265787216 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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