Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_I18
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    36   0.007
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    28   1.4  
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    28   1.4  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = +1

Query: 136 LSGQLYKYTNVVKGWQQRWFAVDPETGVLSYY 231
           +SG L K+TN   G++ RWF ++   GVLSYY
Sbjct: 257 MSGYLKKWTNYKSGYKLRWFTLN--NGVLSYY 286


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 466  PLQPREQLAVHDAMASARQQLQATELSDAALARCIES 576
            P+   EQL VHD +      L+++E   A   RC+ S
Sbjct: 1760 PILDSEQLVVHDFLEELFSSLKSSEEDFALRTRCVTS 1796


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = -3

Query: 277 WPAVQAVLCLXVHHKDNKIEHQSQDQQQTIFAAIPSPHLCIYTID 143
           W A+  +    + H D+++        +   AA  +PH+ +Y I+
Sbjct: 25  WEALSGICSRTIQHADSQVNRLCISPDKKFLAAAGNPHVRLYDIN 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,176
Number of Sequences: 5004
Number of extensions: 39905
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)