Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_I18
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294... 47 1e-05
10_08_0877 + 21230447-21230815,21231855-21232208,21232417-212325... 42 6e-04
12_01_1055 - 10861665-10861829,10862827-10863171,10864374-108646... 39 0.003
08_01_0359 + 3152483-3152857,3154493-3154855,3155133-3155211,315... 38 0.009
03_05_0599 - 26012956-26013316,26013444-26013736,26013813-260140... 33 0.26
06_03_0226 - 18420293-18420697 32 0.35
07_01_0278 + 2039873-2039896,2040342-2040407,2040842-2040903,204... 31 0.80
06_01_0989 + 7672764-7672904,7673017-7673067,7673176-7673296,767... 31 0.80
01_05_0520 + 22902554-22902661,22902848-22902968,22903288-22903922 28 5.6
01_03_0308 - 14883728-14884120 28 5.6
07_03_0950 + 22828787-22828982,22829091-22829164,22829512-228295... 28 7.5
01_05_0627 + 23802235-23802853,23803357-23803430,23804207-238043... 28 7.5
01_01_0539 + 3952039-3952219,3952295-3952984,3953115-3953191,395... 28 7.5
08_02_0721 + 20401217-20401360,20401689-20401809,20401969-204020... 27 9.9
04_04_0169 + 23266110-23266439,23267208-23267288,23267399-232675... 27 9.9
03_05_0031 + 20040889-20041592,20041932-20041977 27 9.9
>03_05_0843 +
28126480-28127007,28127092-28127457,28129388-28129487,
28130266-28130546,28130643-28130705,28131276-28131431,
28131913-28132080,28132158-28132298,28132714-28132840,
28132888-28132994,28134142-28134372,28134446-28134559,
28135091-28135261
Length = 850
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/49 (44%), Positives = 29/49 (59%)
Frame = +1
Query: 136 LSGQLYKYTNVVKGWQQRWFAVDPETGVLSYYLYDGPXDTIQPGQPARG 282
+SG LYK+ N +GW+ RWFA+ GVLSYY GP + + RG
Sbjct: 89 ISGILYKWVNYGRGWRPRWFAL--HDGVLSYYKIHGPDRIVLSRETERG 135
>10_08_0877 +
21230447-21230815,21231855-21232208,21232417-21232504,
21232844-21233268,21233477-21233632,21233849-21234016,
21234170-21234310,21234393-21234629,21234710-21234823,
21235096-21235272
Length = 742
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +1
Query: 136 LSGQLYKYTNVVKGWQQRWFAVDPETGVLSY 228
++G LYK+TN+ KGW+ RWFA+ GVL+Y
Sbjct: 50 VAGVLYKWTNIGKGWRPRWFAI--RGGVLAY 78
>12_01_1055 -
10861665-10861829,10862827-10863171,10864374-10864682,
10864813-10864968,10865669-10866117,10869275-10869359,
10869944-10870300,10870672-10871076
Length = 756
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +1
Query: 136 LSGQLYKYTNVVKGWQQRWFAVDPETGVLSYY 231
++G L+K+ N KGW+ RWF + E GVLSYY
Sbjct: 56 VAGVLHKWVNYGKGWRLRWFVL--EGGVLSYY 85
>08_01_0359 +
3152483-3152857,3154493-3154855,3155133-3155211,
3155473-3155879,3156342-3156497,3156728-3156895,
3156991-3157131,3157739-3157966,3158063-3158176,
3158293-3158448
Length = 728
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/31 (48%), Positives = 24/31 (77%)
Frame = +1
Query: 136 LSGQLYKYTNVVKGWQQRWFAVDPETGVLSY 228
++G L+K+TN +GW++RWF++ GVLSY
Sbjct: 48 VAGVLHKWTNYGRGWRERWFSL--HDGVLSY 76
>03_05_0599 -
26012956-26013316,26013444-26013736,26013813-26014040,
26014666-26014897,26015392-26015475,26015562-26015623,
26016263-26016367,26016458-26016481
Length = 462
Score = 32.7 bits (71), Expect = 0.26
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 136 LSGQLYKYTNVVKGWQQRWFAVDPETGVLSY 228
L G L K + ++ W +RW +DP +G + Y
Sbjct: 33 LQGPLLKRSETLRKWNERWVILDPTSGKMEY 63
>06_03_0226 - 18420293-18420697
Length = 134
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/30 (60%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Frame = -3
Query: 538 RSLVAAAWPTP----WRRGPRAALSAAGAG 461
R + AAA PT WRRGPR A SAAG G
Sbjct: 36 RVVAAAATPTTSTCGWRRGPRPAQSAAGDG 65
>07_01_0278 +
2039873-2039896,2040342-2040407,2040842-2040903,
2042839-2043067,2043787-2044014,2044177-2044469,
2044594-2044909
Length = 405
Score = 31.1 bits (67), Expect = 0.80
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 151 YKYTNVVKGWQQRWFAVDPETGVLSY 228
+K++ ++ W +RW +DP TG + Y
Sbjct: 25 FKFSYELRKWNERWVILDPATGKMEY 50
>06_01_0989 +
7672764-7672904,7673017-7673067,7673176-7673296,
7673406-7673510,7673963-7674024,7674398-7674515,
7674596-7674932,7675389-7675536,7675632-7675733,
7675824-7675943,7676436-7676519,7676622-7676749,
7677351-7677435,7677566-7677713,7677971-7678047,
7678187-7678243,7678423-7678561,7678642-7678796,
7679003-7679116,7679208-7679275,7679830-7679996,
7680245-7680453
Length = 911
Score = 31.1 bits (67), Expect = 0.80
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 139 SGQLYKYTNVVKGWQQRWFAVDPETGVLSY 228
+G L K + GW +RWF ++ ++G L Y
Sbjct: 583 AGYLLKKSAKTNGWSRRWFVLNEKSGKLGY 612
>01_05_0520 + 22902554-22902661,22902848-22902968,22903288-22903922
Length = 287
Score = 28.3 bits (60), Expect = 5.6
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +1
Query: 388 ARARQEWVDGLRAIAXIHTKVMGANPPLQPREQLAVHDAMASARQQLQATELSDAALARC 567
AR RQ VDGLRA A P PRE V D + A+ E++ A+ + C
Sbjct: 170 ARHRQAVVDGLRACV---VAFCAAVPGATPRE---VMDMVLVAQYLDTVREIAAASASGC 223
Query: 568 IESSDSPF-PH 597
++ PF PH
Sbjct: 224 SAAAAVPFLPH 234
>01_03_0308 - 14883728-14884120
Length = 130
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 502 AMASARQQLQATELSDAALARCIESSDSPFPHTDPDLLLLKATSAA 639
AMA++R AT L + +S SPFP T P ++ + T A
Sbjct: 22 AMAASRTDTGATALPSPSPIENSTASRSPFPTTSPSMIDEQTTERA 67
>07_03_0950 + 22828787-22828982,22829091-22829164,22829512-22829570,
22830148-22830487,22830623-22833376
Length = 1140
Score = 27.9 bits (59), Expect = 7.5
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Frame = +1
Query: 259 QPGQPARGEAHLXAAVICPXDEXSKTFTINCAXGDMLXLRATDARARQEWVDGLRAIAXI 438
+P + A G + A C D + + T+N G+ L + D E+ D + +A +
Sbjct: 951 EPAREAVGSGGVTAGN-CVDDPFTGSSTVNPTAGEELQ-KVCDLL--YEYNDDVLGMAFV 1006
Query: 439 HTKVMGANPPLQP--REQLAVHDAMASARQQLQATELSDAALARCIESSDSPFPHTDPDL 612
K ++P L+ E ++ A+ LS A L SSD P TD +
Sbjct: 1007 AKKTSKSSPSLEVLLAESSDSEAEISDAKDTDNDAGLSSARLFSTFSSSDDEAPRTDEPI 1066
Query: 613 L 615
+
Sbjct: 1067 I 1067
>01_05_0627 +
23802235-23802853,23803357-23803430,23804207-23804364,
23804640-23804964
Length = 391
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 595 EGRENLKTLCSARGPRH*VRSL-VAAAWPTPWRRGPRAALSAAGAGWPPSP 446
+GR T CSA H S +++ P PW R R A + A PP P
Sbjct: 47 KGRRT-STACSAERLSHVKSSTRTSSSRPAPWWRRSRMAAAVAVTSSPPRP 96
>01_01_0539 +
3952039-3952219,3952295-3952984,3953115-3953191,
3953356-3953931
Length = 507
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 424 AIAXIHTKVMGANPPLQPREQLA-VHDAMASARQQL 528
A A +H + + PPL P++QLA + A +SA +L
Sbjct: 394 AAALVHHRAVAPPPPLPPQQQLAPPYSAKSSASARL 429
>08_02_0721 +
20401217-20401360,20401689-20401809,20401969-20402067,
20402790-20402851,20403680-20403797,20404004-20404343,
20404435-20404582,20405043-20405144,20405240-20405359,
20405812-20405895,20405974-20406101,20408314-20408389,
20408556-20408631,20408800-20408876,20408975-20409031,
20409411-20409555,20409634-20409806,20409928-20410054,
20410090-20410192,20410492-20410688,20410946-20411097
Length = 882
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 139 SGQLYKYTNVVKGWQQRWFAVDPETGVLSY 228
+G L+K W RWF ++ +G L Y
Sbjct: 539 AGFLFKKRAKANDWSNRWFVLNERSGKLGY 568
>04_04_0169 +
23266110-23266439,23267208-23267288,23267399-23267538,
23267815-23268070
Length = 268
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = -1
Query: 483 LSRLQG--RVGPHHLGVYXSN 427
LSRL G R GPHH VY +N
Sbjct: 18 LSRLAGAARFGPHHCAVYAAN 38
>03_05_0031 + 20040889-20041592,20041932-20041977
Length = 249
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 500 SWTASCSLGCRGGLAPITLVCXSAMALSPSTHSWRARA 387
S TA C++ G+ P C +A A+ PST RA
Sbjct: 41 SGTADCTVSSAYGVFPDRSTCRAAAAVYPSTEEELVRA 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,429,614
Number of Sequences: 37544
Number of extensions: 333019
Number of successful extensions: 1123
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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