Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_I18
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)                51   9e-07
SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_37867| Best HMM Match : PH (HMM E-Value=0.0027)                     33   0.20 
SB_321| Best HMM Match : No HMM Matches (HMM E-Value=.)                32   0.47 
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_10793| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_21872| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_42880| Best HMM Match : Laminin_II (HMM E-Value=2.1)                28   7.6  
SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)                    28   7.6  

>SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)
          Length = 926

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 36/107 (33%), Positives = 48/107 (44%)
 Frame = +1

Query: 100 KMMKTGLTSHRPLSGQLYKYTNVVKGWQQRWFAVDPETGVLSYYLYDGPXDTIQPGQPAR 279
           K M  G        G L K+TN +KG+Q+RWF +    G+LSYY      +  +     R
Sbjct: 304 KNMPDGRVCPDHFRGWLLKWTNYIKGYQRRWFVL--SNGLLSYY-----RNQAEMAHTCR 356

Query: 280 GEAHLXAAVICPXDEXSKTFTINCAXGDMLXLRATDARARQEWVDGL 420
           G  +L  A I   D  S  F I+     +  LRA+    RQ WV  L
Sbjct: 357 GTINLAGAFIDTEDACS--FVISNGGTQVFHLRASTEVERQRWVTAL 401


>SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
 Frame = +1

Query: 178 WQQRWFAVDPETGVLSYYLYDG------PXDTIQPGQPARGEAHLXAAVICPXDEXSKTF 339
           WQ+RW  +  E G+LSY+LY G      P  ++   Q A       + V+C      +  
Sbjct: 279 WQRRWCVL--EGGMLSYWLYPGDETTKAPLGSLDLSQCASSHVTTVSRVLCARPNTMELV 336

Query: 340 TINCAXGDMLXLRATDARA-RQEWVDGL 420
                   +  L A D +A +  W+D L
Sbjct: 337 INKGDNNSIKYLLAADTKADKVTWLDSL 364


>SB_37867| Best HMM Match : PH (HMM E-Value=0.0027)
          Length = 369

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 142 GQLYKYTNVVKGWQQRWFAVDPETGVLSYY 231
           G L+K  ++ K W+ RWF +D +   L YY
Sbjct: 214 GYLHKRGHLFKQWKSRWFVLDTQRNQLRYY 243


>SB_321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 178 WQQRWFAVDPETGVLSYYLYD 240
           WQ+RWF ++   GVL Y++YD
Sbjct: 20  WQRRWFVLN-SAGVLEYFIYD 39


>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 460 NPPLQPR-EQLAVHDAMASARQQLQATELSDAALARCIESSDSPFPHTDPD 609
           NP L+ R E++A+   M++ ++ L     +D     C + SDS    TDP+
Sbjct: 590 NPLLEHRTEKVALSKPMSNGKEDLNTETTADVNKKSCADGSDSIIGTTDPN 640


>SB_10793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
 Frame = -3

Query: 556 GPRH*VRSLVAAAWPTPWRR------GPRAALSAAGAGWPPSPW 443
           GPR+   ++     PTPW +      GPR   +    G  P+PW
Sbjct: 305 GPRYTSNTMDQGTHPTPWTKVHIQHYGPRYTSNTMDQGTHPTPW 348



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
 Frame = -3

Query: 556 GPRH*VRSLVAAAWPTPWRR------GPRAALSAAGAGWPPSPW 443
           GPR+   ++     PTPW +      GPR   +    G  P+PW
Sbjct: 279 GPRYTSNNMDQRTHPTPWTKVHIKHHGPRYTSNTMDQGTHPTPW 322


>SB_21872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 160 TNVVKGWQQRWFAVDPETGVLSYYLY 237
           TN+V    + W+  DP TG L  Y +
Sbjct: 492 TNIVTSVDKSWYPTDPNTGHLENYFF 517


>SB_42880| Best HMM Match : Laminin_II (HMM E-Value=2.1)
          Length = 647

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 391 RARQEWVDGLRAIAXIHTKV 450
           +AR +WV+ LRAI+  H+K+
Sbjct: 456 KARSQWVNALRAISSRHSKL 475


>SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)
          Length = 591

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 160 TNVVKGWQQRWFAVDPETGVLSYY 231
           T V K W++RWF +D     L+Y+
Sbjct: 495 TEVRKNWKKRWFVLDFTKKYLAYF 518


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,009,414
Number of Sequences: 59808
Number of extensions: 339436
Number of successful extensions: 887
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)