Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_I16
(630 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB183889-1|BAD86829.1| 316|Apis mellifera Mos protein. 31 0.007
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 21 7.5
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.5
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.5
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.5
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.5
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.5
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.5
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.5
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.5
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 21 7.5
>AB183889-1|BAD86829.1| 316|Apis mellifera Mos protein.
Length = 316
Score = 31.5 bits (68), Expect = 0.007
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +2
Query: 413 IGNGSFGVVYQAKLCDTGELIAIKKVLQDKRFKNRXLQIMRR--LEHCNIVKL 565
+G+G FG+VY+A GE +A K++Q +++ N L+H NIVK+
Sbjct: 73 LGSGGFGIVYKALY--KGEQVA-AKIIQTEKYSNMLNSEKHASFLKHSNIVKV 122
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 21.4 bits (43), Expect = 7.5
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -3
Query: 124 TTLSNTNSMKKYLKQYH 74
T + NTN KY+++Y+
Sbjct: 199 TYIVNTNYSSKYMREYN 215
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2
Query: 578 KRNTSVSQCCNAPAV 534
K+NT QCC P V
Sbjct: 168 KKNTITYQCCPEPYV 182
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2
Query: 578 KRNTSVSQCCNAPAV 534
K+NT QCC P V
Sbjct: 168 KKNTITYQCCPEPYV 182
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2
Query: 578 KRNTSVSQCCNAPAV 534
K+NT QCC P V
Sbjct: 168 KKNTITYQCCPEPYV 182
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2
Query: 578 KRNTSVSQCCNAPAV 534
K+NT QCC P V
Sbjct: 168 KKNTITYQCCPEPYV 182
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2
Query: 578 KRNTSVSQCCNAPAV 534
K+NT QCC P V
Sbjct: 168 KKNTITYQCCPEPYV 182
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2
Query: 578 KRNTSVSQCCNAPAV 534
K+NT QCC P V
Sbjct: 168 KKNTITYQCCPEPYV 182
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2
Query: 578 KRNTSVSQCCNAPAV 534
K+NT QCC P V
Sbjct: 236 KKNTITYQCCPEPYV 250
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2
Query: 578 KRNTSVSQCCNAPAV 534
K+NT QCC P V
Sbjct: 236 KKNTITYQCCPEPYV 250
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 21.4 bits (43), Expect = 7.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +2
Query: 491 LQDKRFKNRXLQIMRRLEHCNIVKL 565
L DK+FKN+ L ++ + + +L
Sbjct: 43 LMDKQFKNKSLPVIEIWDQMTVKEL 67
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,115
Number of Sequences: 438
Number of extensions: 3019
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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