Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_I15
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    32   0.062
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    31   0.14 
SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   1.0  
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    27   3.1  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    26   4.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.4  

>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 32.3 bits (70), Expect = 0.062
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 272 EVDGESAALSYSTRACPVVGPLVSPRGNTINRWVVTSIERF 394
           +VD  SA   +  R  PV+GP+    G TI  +V+TSI ++
Sbjct: 318 DVDELSALPEFRARILPVIGPMPGIFGLTIATYVLTSIAKY 358


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 16/48 (33%), Positives = 29/48 (60%)
 Frame = -3

Query: 450 TILKFISKMQIEIIRYFNLNRSIEVTTHRLIVFPRGLTRGPTTGHARV 307
           TIL F  ++Q EII  +  ++  ++ +HR+  F +G++R   +GH  V
Sbjct: 224 TILLFQQELQAEIIEKWPKHKLTKLRSHRIATFLKGISR--RSGHQMV 269


>SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 73

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +1

Query: 409 NYFNLHFAYKFE-YSNTFIL-CSCIS 480
           N+ N HF +K + YS TF+L C C+S
Sbjct: 4   NHENPHFLFKIDSYSKTFLLSCYCVS 29


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 506 NFTYHVLLRDIQLHKINV 453
           NFT  ++LRDIQ H I +
Sbjct: 254 NFTKEMILRDIQYHNIRI 271


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 46  IEHCGAKPADRTMWTRMQRLRENTKHLFLYVIDDKNIARMLDTHTIDQ 189
           IE    + A+R    R+Q L+EN +  +L +ID     R+  TH + Q
Sbjct: 307 IEKEEQRRAERNAKQRLQALKENDEEAYLKLIDQAKDTRI--THLLRQ 352


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 204 TRPSQRHRQMIMFDFNSVPLNLLKSMENPRHCHTV 308
           TR + + +  I+ DF  + L    SM NP+H  TV
Sbjct: 144 TRRTMKEQLSIISDFEYMQLQGPVSMHNPQHVFTV 178


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 198  FDDLVYGVRVQHAGDVLV--VYHVQEEMLRVLSEALHAR 88
            F      +R+ H  D ++  +YH  E+ L  +SEA+H +
Sbjct: 3302 FSQHAASLRICHGIDAMLLNIYHYFEQFLSKVSEAIHTQ 3340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,067
Number of Sequences: 5004
Number of extensions: 53923
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)