Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_I15
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0372 + 28828552-28829913                                         31   1.1  
09_06_0183 - 21406474-21406636,21407412-21407956                       30   1.8  
08_02_1298 - 25964937-25965039,25965297-25965363,25965540-259656...    28   5.6  
09_02_0082 - 4060018-4061604                                           27   9.8  
04_01_0028 - 365949-366710,366778-366909,366952-366957                 27   9.8  

>01_06_0372 + 28828552-28829913
          Length = 453

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -2

Query: 184 LWCACPACGRCSCRLSRTGRDASCSLGG-VACASTSCDPL 68
           +W  C AC RCS R S +    S S    VAC   +C  L
Sbjct: 116 IWTKCGACARCSPRGSPSYYPTSSSSAAFVACGDRTCGEL 155


>09_06_0183 - 21406474-21406636,21407412-21407956
          Length = 235

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = +3

Query: 36  RESDRALRS*TSGSHDVDAHATPPREHEASLPVRDRRQE 152
           R + R  RS T G H V A ATPPR    + P   RR E
Sbjct: 76  RGAYRRPRSTTVGIHRVGAEATPPRPSLVAPPPYPRRPE 114


>08_02_1298 -
           25964937-25965039,25965297-25965363,25965540-25965661,
           25965868-25965951,25966138-25966234,25966330-25966372,
           25966490-25966560,25966751-25966878,25967168-25967258,
           25967357-25967472,25967566-25967639
          Length = 331

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 166 ACGRCSCRLSRTGRD-ASCSLGGVACAS 86
           +C RC+CR+ R+G+     S  G  C+S
Sbjct: 18  SCSRCTCRIRRSGKTRIGASAAGRRCSS 45


>09_02_0082 - 4060018-4061604
          Length = 528

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 351 PRGLTRGPTTGHARVLYDNAADSPST 274
           P GLT  PTT H    Y  A+ S +T
Sbjct: 122 PLGLTMSPTTAHYSFSYGGASSSSAT 147


>04_01_0028 - 365949-366710,366778-366909,366952-366957
          Length = 299

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 193 RSGLWCACPACGRCSCRLSRTGRDASCSLGGVA 95
           +S L  ACP    C+  L+   RD+   LGG A
Sbjct: 83  KSALEAACPGVVSCADALALMARDSFALLGGTA 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,981,034
Number of Sequences: 37544
Number of extensions: 337554
Number of successful extensions: 790
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)