Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_I15
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42674| Best HMM Match : DUF26 (HMM E-Value=1)                       29   4.3  
SB_53799| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   5.7  
SB_9939| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_9580| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  
SB_48434| Best HMM Match : Phycoerythr_ab (HMM E-Value=3.1)            28   7.6  

>SB_42674| Best HMM Match : DUF26 (HMM E-Value=1)
          Length = 493

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 198 TYTRPSQRHRQMIMFDFNSVPLNLLKSMENPRH 296
           T ++P+ RH+  +  D +  P++ L++  NP+H
Sbjct: 429 TQSKPAPRHKSSVPNDGDDDPVHTLRNRMNPQH 461


>SB_53799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 195 QTYTRPSQRHRQMIMFDFNSVPLNLLKSMENPRHCHTVHAR 317
           QT +RPS     +   + ++ P  LL S+++ + CH  H R
Sbjct: 444 QTISRPSPAAETLACEEKSAKPGTLLCSLQHAQLCHRTHVR 484


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 15   RWLKIGFRESDRALRS*TSGSHDVDAHAT 101
            +WL++ F+   + +R  T G HD+D   T
Sbjct: 2417 QWLQVDFKRPTKIIRIATQGRHDLDQWVT 2445


>SB_9939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -1

Query: 485 LRDIQLHKINVLLYSNL*AKCKLK*FVIST*IALLKSQP 369
           LR++QL+  N LLY+ +  KC+ K F +    A +K +P
Sbjct: 48  LRELQLYLSNYLLYTCVLEKCQHKEFSLLRQKANIKGEP 86


>SB_9580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = -2

Query: 193 RSGLWCACPACGRCSCRL---SRTGRDASCSLGGV 98
           R GLW + P C R +  +     T RD SC   G+
Sbjct: 69  RCGLWASSPRCSRQNQNIKPKENTTRDGSCVFQGI 103


>SB_48434| Best HMM Match : Phycoerythr_ab (HMM E-Value=3.1)
          Length = 350

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/56 (30%), Positives = 35/56 (62%)
 Frame = +1

Query: 31  VLEKVIEHCGAKPADRTMWTRMQRLRENTKHLFLYVIDDKNIARMLDTHTIDQIVK 198
           V  KV+E  GAK AD+T ++ ++ + E+ K + +Y +D + I++ +D   +  ++K
Sbjct: 292 VRAKVVEVFGAKGADKT-YSMIKDVLEDEKMISVYSLDGE-ISQDIDLAILKALLK 345


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,352,295
Number of Sequences: 59808
Number of extensions: 421977
Number of successful extensions: 981
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)