Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_I15
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117204-39|CAB55145.4| 422|Caenorhabditis elegans Hypothetical... 29 2.2
AF016418-6|AAK18899.1| 248|Caenorhabditis elegans Hypothetical ... 29 3.8
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 29 3.8
Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical p... 28 5.0
AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 28 5.0
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 28 6.6
Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical pr... 28 6.6
U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical pr... 28 6.6
U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta p... 28 6.6
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 28 6.6
AF016418-7|AAK18898.1| 248|Caenorhabditis elegans Hypothetical ... 28 6.6
U55365-9|AAA98574.1| 346|Caenorhabditis elegans Hypothetical pr... 27 8.7
AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase prot... 27 8.7
AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in ... 27 8.7
AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase prot... 27 8.7
>AL117204-39|CAB55145.4| 422|Caenorhabditis elegans Hypothetical
protein Y116A8C.9 protein.
Length = 422
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -1
Query: 224 VSLTWASICLTIW---SMVCVSSMRAMFLSSITYRKRCFVFSRRR 99
V TWA + + +W S+ V + A+ LS + R R F+ + RR
Sbjct: 174 VDWTWAVVFIPLWVVLSLAAVGVLYALVLSVVLIRSRHFIPAHRR 218
>AF016418-6|AAK18899.1| 248|Caenorhabditis elegans Hypothetical
protein C49G7.4 protein.
Length = 248
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 163 CGRCSCRLSRTGRDASCSLGGVACASTSC 77
C RCS + TG SC +A +ST+C
Sbjct: 190 CNRCSSSTAATGTGGSCGGRYIADSSTAC 218
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 124 LFLYVIDDKNIARMLDTHTIDQIVKHILAQVSDTDK 231
LFL KN ++++T + Q+ +HIL +D DK
Sbjct: 111 LFLSRFFAKNDPKIVETEEVKQLAEHILKTSNDADK 146
>Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical
protein Y69H2.11 protein.
Length = 887
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 154 CSCRLSRTGRDASCSLGGVACASTSC 77
CSC+ TG D LG ACA++ C
Sbjct: 46 CSCKPGFTGNDCKSELGS-ACATSPC 70
>AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical
protein F54A3.1 protein.
Length = 425
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 124 LFLYVIDDKNIARMLDTHTIDQIVKHILAQVSDTDK 231
LFL KN + ++T + Q+ +HIL +D DK
Sbjct: 114 LFLSRFFAKNDPKTVETEAVKQLAEHILKTSNDADK 149
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 190 SGLWCACPACGRCSCRLSRTGRDASCSLGGVAC 92
SG W P C RCSC ++ +A C AC
Sbjct: 1799 SGWWGTFPRCRRCSCAQTK-DYEAQCDKKTGAC 1830
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 190 SGLWCACPACGRCSCRLSRTGRDASCSLGGVAC 92
SG W P C RCSC ++ +A C AC
Sbjct: 1799 SGWWGTFPRCRRCSCAQTK-DYEAQCDKKTGAC 1830
>Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical
protein ZK1058.2 protein.
Length = 809
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 163 CGRCSCRLSRTGRDASCSLGGVACASTS 80
CG+C C TGR C + +C S +
Sbjct: 586 CGKCICAPGWTGRACECPISTDSCLSAN 613
>U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical
protein T10E10.4 protein.
Length = 966
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = -2
Query: 187 GLWCACPACGRCSCRLSRTGRDASCSLGGVACASTSCDPL 68
GL C P C L R C GV C + +C PL
Sbjct: 502 GLCCPLPKCSNGITSLGICTRTLDCGRIGVDCNNGACCPL 541
>U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta
pat-3 protein.
Length = 809
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 163 CGRCSCRLSRTGRDASCSLGGVACASTS 80
CG+C C TGR C + +C S +
Sbjct: 586 CGKCICAPGWTGRACECPISTDSCLSAN 613
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 190 SGLWCACPACGRCSCRLSRTGRDASCSLGGVAC 92
SG W P C RCSC ++ +A C AC
Sbjct: 1818 SGWWGTFPRCRRCSCAQTK-DYEAQCDKKTGAC 1849
>AF016418-7|AAK18898.1| 248|Caenorhabditis elegans Hypothetical
protein C49G7.3 protein.
Length = 248
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 163 CGRCSCRLSRTGRDASCSLGGVACASTSC 77
C RCS + TG SC +A +ST+C
Sbjct: 190 CQRCSSTTAATGTGGSCGGRYIADSSTAC 218
>U55365-9|AAA98574.1| 346|Caenorhabditis elegans Hypothetical
protein C12D5.9 protein.
Length = 346
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 487 CYVIYNCIK*MCYYTQIYKQNAN 419
C + NC++ C+YTQ + NAN
Sbjct: 239 CDELQNCLQKSCFYTQHNQTNAN 261
>AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase protein.
Length = 1262
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 260 P*LIEVDGESAALSYSTRACP-VVGPLVSPRGNTINRWVVTSIE 388
P + DG++A L Y+ CP +VG L + I+R+++ I+
Sbjct: 1047 PQALGFDGKTAILDYAMAKCPLIVGCLWTVTDGEIDRFLIRMID 1090
>AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 7 protein.
Length = 438
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = -2
Query: 265 LRGTLLKSNIIICRCR*LGRVYV*RSGLWCACPACGRCSCRLSRTGRDASCSLGGVACAS 86
+R T L + C G V + CA P +CSC+ + + SC V S
Sbjct: 1 MRFTSLAIAFLACALVVSGSVIREKRQCGCAQPQQSQCSCQQVQQTQSCSCQSAPVQQQS 60
Query: 85 TSC 77
SC
Sbjct: 61 PSC 63
>AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase protein 1
protein.
Length = 1262
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 260 P*LIEVDGESAALSYSTRACP-VVGPLVSPRGNTINRWVVTSIE 388
P + DG++A L Y+ CP +VG L + I+R+++ I+
Sbjct: 1047 PQALGFDGKTAILDYAMAKCPLIVGCLWTVTDGEIDRFLIRMID 1090
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,871,049
Number of Sequences: 27780
Number of extensions: 309633
Number of successful extensions: 924
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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