Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_I10
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016445-9|AAC69061.1| 156|Caenorhabditis elegans Hypothetical ... 31 0.71
U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein. 29 3.8
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 29 3.8
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 29 3.8
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein... 29 3.8
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein... 29 3.8
AF098999-6|AAC68724.2| 787|Caenorhabditis elegans Half transpor... 28 5.0
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 28 6.7
Z22174-2|CAA80130.2| 410|Caenorhabditis elegans Hypothetical pr... 27 8.8
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 27 8.8
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr... 27 8.8
>AF016445-9|AAC69061.1| 156|Caenorhabditis elegans Hypothetical
protein T05B4.13 protein.
Length = 156
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -1
Query: 332 NSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFN--SSGLAS 207
N+ +RTC P+ TA+ S TAS S STC ++N SS L S
Sbjct: 87 NTYCQRTCGRCPSSTTASSSSTASSS---STCTSYNADSSSLCS 127
>U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical
protein T20F5.6 protein.
Length = 794
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 139 DPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ 261
+ EA A R+ K + ALL PDA PD N ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730
>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 586 WHXSWA-MQLCLWHYSTFSLFCPWVHLLHYXHR*XENHXLXL 464
WH + + CL + TF+ FC + +LHY NH + L
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYIDNETFNHLIYL 332
>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 586 WHXSWA-MQLCLWHYSTFSLFCPWVHLLHYXHR*XENHXLXL 464
WH + + CL + TF+ FC + +LHY NH + L
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYIDNETFNHLIYL 332
>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
Length = 1440
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 586 WHXSWA-MQLCLWHYSTFSLFCPWVHLLHYXHR*XENHXLXL 464
WH + + CL + TF+ FC + +LHY NH + L
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYIDNETFNHLIYL 332
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
protein F57F4.4 protein.
Length = 2090
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +3
Query: 309 ACTS--GH*IPRCACYIYSCSGFGASTLNWTPSPW 407
ACT+ G I C CY C+ TPSPW
Sbjct: 185 ACTNLAGTNIQGCCCYKQDCTSLAPMNNPPTPSPW 219
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +3
Query: 309 ACTS--GH*IPRCACYIYSCSGFGASTLNWTPSPW 407
ACT+ G I C CY C+ TPSPW
Sbjct: 185 ACTNLAGTNIQGCCCYKQDCTSLAPMNNPPTPSPW 219
>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 586 WHXSWA-MQLCLWHYSTFSLFCPWVHLLHYXHR*XENHXLXL 464
WH + + CL + TF+ FC + +LHY NH + L
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYIDNETFNHLIYL 332
>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 586 WHXSWA-MQLCLWHYSTFSLFCPWVHLLHYXHR*XENHXLXL 464
WH + + CL + TF+ FC + +LHY NH + L
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYIDNETFNHLIYL 332
>AF098999-6|AAC68724.2| 787|Caenorhabditis elegans Half transporter
(pgp related)protein 4 protein.
Length = 787
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -1
Query: 407 PRRWCPIKCTGPEP*TRVNVTGAS-GNSMSRRTCLDSPTFNTATGSFTA 264
PR+ + +GP+P +NV G S GN+MS L S +F+ + S T+
Sbjct: 742 PRKRPAVARSGPQPAASINVAGPSQGNAMS----LLSTSFSQSASSVTS 786
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 338 SGNSMSRRTCLDSPTFNTATGSFTAS-CSDMASTCITFNSSGLAS 207
S NS S + DS + ++T S T + C D STC ++ ++G +
Sbjct: 104 SSNSSSSTSSSDSTSVVSSTSSSTTTTCVDSFSTCTSWAANGFCT 148
>Z22174-2|CAA80130.2| 410|Caenorhabditis elegans Hypothetical
protein K01B6.3 protein.
Length = 410
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 577 SWAMQLCLWHYSTFSLFCPWVHLLHY 500
SWA+ +C+ STF+L C +LHY
Sbjct: 80 SWALLVCIIE-STFALICFLAVMLHY 104
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 68 VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 184
V SS +T + S FHHH SQ G R +N A T+++
Sbjct: 700 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 737
>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
protein C04D8.1 protein.
Length = 1317
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 68 VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 184
V SS +T + S FHHH SQ G R +N A T+++
Sbjct: 578 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 615
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,776,972
Number of Sequences: 27780
Number of extensions: 257464
Number of successful extensions: 703
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -