Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_I09
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.6  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    26   2.8  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    25   3.7  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    24   8.6  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    24   8.6  

>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 151 LPHHPLNISEASISKQSEPAKKKTVVPEDKFYSDESN 261
           +P+  L+I+E     Q+ P  +  V+P++   SDE N
Sbjct: 219 IPYSSLSIAERIKQAQNTPFLESKVLPQNNETSDEEN 255


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 38  IPLPSCSQDVQPLENRCSNDKAIQVAPAQ 124
           +PLPS  ++ +PLE R  +D    +A  Q
Sbjct: 472 VPLPSEMKEAEPLEGRYPSDHVALMANVQ 500


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 166 GGDVAIHTCLAFVFLCWSYLDSFVITTPIFKWLDILT 56
           GG +     L  +F  W  LDS +  + +   +DI T
Sbjct: 222 GGRITDSMVLVIIFHTWYVLDSLINESAVLTTMDITT 258


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 184 SISKQSEPAKKKTVVPEDKFYSDESNAPA 270
           S ++++  A KK    ED+FY  E    A
Sbjct: 361 SYTRKTSNASKKLTTEEDEFYDSEEEPEA 389


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 148 VLPHHPLNISEASISKQSEPAKKKTVVPEDKFYSDESNAPATEGST 285
           V P+   + SE + SKQ+E  +  +V    +  + ES  P + GST
Sbjct: 118 VQPNIVKSESEPANSKQNEVVEATSVEKAKENVAHESGTPESGGST 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,519,597
Number of Sequences: 5004
Number of extensions: 26105
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)