Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_I09
         (425 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23061| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_22295| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_23061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 86  CSNDKAIQVAPAQEHKGKASVYCHITP 166
           CS   +++ A AQE K KA V   +TP
Sbjct: 3   CSASASLKAAKAQEAKKKAKVVISLTP 29


>SB_22295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +1

Query: 154 PHHPLNISEASISKQ----SEPAKKKTVVPEDKFYSDESNAPA 270
           PH+PL I  ASI+KQ        KKK    +     + +N PA
Sbjct: 421 PHNPLCIDTASINKQINELESSRKKKPYEKQKSALENYANTPA 463


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,189,937
Number of Sequences: 59808
Number of extensions: 187604
Number of successful extensions: 498
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)