Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_I09
         (425 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7) ident...    29   1.00 
At4g23980.1 68417.m03447 auxin-responsive factor (ARF9) contains...    27   7.0  
At3g55320.1 68416.m06144 ABC transporter family protein similar ...    27   7.0  
At5g24310.1 68418.m02861 expressed protein strong similarity to ...    26   9.3  
At4g02880.1 68417.m00388 expressed protein                             26   9.3  

>At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7)
           identical to COP1-Interacting Protein 7 (CIP7)
           GI:3327868 from [Arabidopsis thaliana]
          Length = 1058

 Score = 29.5 bits (63), Expect = 1.00
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 163 PLNISEASISKQSEPAKKKTVVPEDKFYSDESNAPATEGSTVDYGLXNKXINSYLFKLIL 342
           P+N+ +   +++S   KKK    + K   DES  P+   ST               K+++
Sbjct: 327 PVNMGDVESNEKSSKKKKKKKKNKKKSKQDESAEPSDNSSTETESEDGNEGKKQSRKVVI 386

Query: 343 MNIN 354
            NIN
Sbjct: 387 RNIN 390


>At4g23980.1 68417.m03447 auxin-responsive factor (ARF9) contains
           Pfam profiles: PF02309 AUX/IAA family and PF02362: B3
           DNA binding domain
          Length = 638

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 154 PHHPLNISEASISKQSEPAKKKTVVPEDKFYSDESNAP 267
           P  P+NIS+ ++   S+P  + + V E+K       +P
Sbjct: 474 PMRPINISKPTMDSHSDPKSEISKVSEEKKQEPAEGSP 511


>At3g55320.1 68416.m06144 ABC transporter family protein similar to
           multidrug resistant P-glycoprotein pmdr1 GI:4204793 from
           [Solanum tuberosum]
          Length = 1408

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 171 IKGVMWQYTLALPLCSCAGATWIALSLLH 85
           ++G+   +T  L +CSCA   WI    +H
Sbjct: 318 VQGLGLGFTYGLAICSCALQLWIGRFFVH 346


>At5g24310.1 68418.m02861 expressed protein strong similarity to
           unknown protein (emb|CAB66408.1)
          Length = 321

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 172 ISEASISKQSEPAKKKTVVPEDKFYSDESNAPAT 273
           I  +SIS+ + P+K + V P  K Y  E    A+
Sbjct: 240 IRPSSISRPTTPSKSRAVTPTPKRYPSEPRRSAS 273


>At4g02880.1 68417.m00388 expressed protein
          Length = 552

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = +1

Query: 121 TGTQRQGKCVLPHHPLNISEASISKQSEPAKKKTVVPEDKFYSDESNAP 267
           TG   QG  V  H   N +EAS S  SE A  K V P D     +++ P
Sbjct: 159 TGDDWQG--VEFHSTGNQAEASTSADSEDAVHKLVYPADNLAITQNSHP 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,685,836
Number of Sequences: 28952
Number of extensions: 128650
Number of successful extensions: 384
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)