Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_I06
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         28   1.0  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   1.8  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    26   4.1  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    26   5.4  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   7.2  

>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 19/77 (24%), Positives = 34/77 (44%)
 Frame = -1

Query: 474 IQVXIYNXQHFNIHKFFKSSDLLTVPLFDCLSNVGSRMTNNFR*QMKKNLIALNFSRSLN 295
           + V   N +H  +H   K + LLT+     +S      +N     +   L   NFS+SL 
Sbjct: 1   MDVDFANAKH-KLHCLLKKNFLLTIRFSSLVSIQYIPFSNRLYEIISIALNPCNFSKSLF 59

Query: 294 WYSTNIRSNIFYKQNLE 244
           W    I++++  K + +
Sbjct: 60  WLRKKIKNSVLLKTSFD 76


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 505 FLTVFFFNYCICFHKAGYIHAFET 576
           F   FFF++C  FH A +IH +++
Sbjct: 79  FFFFFFFSHCRRFHIAIFIHPYDS 102


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 141 AAFQVLVDPNLALDHGRPPMMTSDLINI 224
           A  Q LVDP LA D G  P    DL+ +
Sbjct: 375 ATCQSLVDPELADDEGANPTGLYDLVGV 402


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 538 CFHKAGYIHAFETALHCSVTDSFHLFNRXDYYLL 639
           CF+   Y++ FE  + C+  +S        YY L
Sbjct: 187 CFYPGEYVYNFELPISCTYPESIQTDMGRVYYFL 220


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 332  FFICHLKLFVILEPTLL 382
            FF+CHL LF++L P LL
Sbjct: 1779 FFLCHLLLFLML-PVLL 1794


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,807
Number of Sequences: 5004
Number of extensions: 35326
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)