Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_I06
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi...    38   0.008
At1g70870.1 68414.m08176 major latex protein-related / MLP-relat...    28   6.2  

>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
           protein similar to Hsc70-interacting protein (Hip) from
           {Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
           contains Pfam profile PF00515: tetratricopeptide repeat
           (TPR) domain
          Length = 441

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +2

Query: 32  LQRNPANFIKYQNNPKIAAVIAKLQAK 112
           + +NPAN  K+Q NPK+A VIAK+  K
Sbjct: 410 VMKNPANLAKHQANPKVAPVIAKMMGK 436


>At1g70870.1 68414.m08176 major latex protein-related / MLP-related
           low similarity to major latex protein {Papaver
           somniferum}[GI:294060] ; contains Pfam profile PF00407:
           Pathogenesis-related protein Bet v I family
          Length = 139

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 309 KSLTLLNFSSFVT*NYSSFSSQHYLNSQITGPSKGRW 419
           KS+T+  F   V  NYSSF+    +  ++ G S  RW
Sbjct: 68  KSMTVFVFEGDVMENYSSFTCNLQIIPKLHGRSIARW 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,096,754
Number of Sequences: 28952
Number of extensions: 160515
Number of successful extensions: 328
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)