Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_I04
(372 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical p... 30 0.46
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 30 0.61
Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical pr... 29 0.80
U80838-2|AAL02517.1| 297|Caenorhabditis elegans Abnormal cell l... 28 1.9
U80838-1|AAU05570.1| 597|Caenorhabditis elegans Abnormal cell l... 28 1.9
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ... 28 1.9
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ... 27 3.2
AC084156-1|AAK68491.2| 466|Caenorhabditis elegans Hypothetical ... 27 3.2
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 27 5.7
U67953-4|AAL13329.1| 732|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr... 26 7.5
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr... 26 7.5
AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain pro... 26 7.5
AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain pro... 26 7.5
AC024799-9|AAK72312.1| 293|Caenorhabditis elegans Hypothetical ... 26 7.5
Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical pr... 26 9.9
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 26 9.9
Z75549-4|CAA99919.2| 304|Caenorhabditis elegans Hypothetical pr... 26 9.9
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 26 9.9
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 26 9.9
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr... 26 9.9
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 26 9.9
Z22178-2|CAA80154.1| 261|Caenorhabditis elegans Hypothetical pr... 26 9.9
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 26 9.9
U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical pr... 26 9.9
AL110500-7|CAB54490.1| 489|Caenorhabditis elegans Hypothetical ... 26 9.9
AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B ... 26 9.9
AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical ... 26 9.9
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 26 9.9
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 26 9.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 26 9.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 26 9.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 26 9.9
>Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical
protein K10C8.3b protein.
Length = 141
Score = 30.3 bits (65), Expect = 0.46
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = -3
Query: 349 RAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHH 173
R S+ ++ + +RP + R ++ P P R RS + + K + V P+H
Sbjct: 17 RKKSKSVKRCSSCKRPNSTRRSKTPDPNSEKEKVRNRSGSSSKKEKKNSLVNPNLQPNH 75
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 29.9 bits (64), Expect = 0.61
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -1
Query: 360 PGGAEP*AGTSGPPQRPGAQAQ 295
PGG P G SGPP RPGA Q
Sbjct: 204 PGGDAP-PGPSGPPGRPGAPGQ 224
>Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical
protein C01F6.5 protein.
Length = 223
Score = 29.5 bits (63), Expect = 0.80
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -1
Query: 336 GTSGPPQRPGAQAQRETLGVRS 271
GT+GP +RP AQ +R++ G+R+
Sbjct: 38 GTAGPSRRPTAQPRRQSGGIRT 59
>U80838-2|AAL02517.1| 297|Caenorhabditis elegans Abnormal cell
lineage protein 42,isoform a protein.
Length = 297
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 366 TPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS 262
T GGA P +GT+ PP P + L +R Q+
Sbjct: 263 TSTGGASPTSGTNSPPVFPKTSSSSSLLMLRDSQN 297
>U80838-1|AAU05570.1| 597|Caenorhabditis elegans Abnormal cell
lineage protein 42,isoform b protein.
Length = 597
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 366 TPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS 262
T GGA P +GT+ PP P + L +R Q+
Sbjct: 563 TSTGGASPTSGTNSPPVFPKTSSSSSLLMLRDSQN 597
>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
protein Y47D3B.7 protein.
Length = 1113
Score = 28.3 bits (60), Expect = 1.9
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -2
Query: 332 HQDHHRGPAPRHSEKHSASEA-DRAERLLPGALRDAPSPE*TFSTCLVSTESTPFP 168
+ HH+ P P H H + + E++ ++ DAP T T LV +S P
Sbjct: 220 YSQHHQSPPPHHHHHHPMPKIHENPEQVASPSIEDAPE---TKPTHLVEPQSPKSP 272
>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
protein Y32B12B.4 protein.
Length = 1528
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 320 HRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 216
H GP E+H +E D E LL G L D P +
Sbjct: 258 HSGPVAMKMEEHEETEEDFLE-LLNGTLDDVPDSD 291
>AC084156-1|AAK68491.2| 466|Caenorhabditis elegans Hypothetical
protein Y46E12BL.4 protein.
Length = 466
Score = 27.5 bits (58), Expect = 3.2
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -2
Query: 365 PLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDA 228
PLR S Q H H R P HS + R E P AL+ A
Sbjct: 309 PLRPPPSSLQHHHHHRRSPPLFHSPVYKPKPRSRTES--PAALKAA 352
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 325 TTTEARRPGTARNTRRPKPTELSACCRERSETP 227
TTT +RP T T P+P E +E++E P
Sbjct: 163 TTTTTKRPPTTTTTEDPQPFEFHE-LQEQAENP 194
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 363 PPGGAEP*AGTSGPPQRPG 307
PPG A P AG +GPP PG
Sbjct: 170 PPGPAGP-AGNAGPPGAPG 187
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 366 TPPGGAEP*AGTSGPPQRPGAQAQ 295
TP GGA G GPP PG Q
Sbjct: 195 TPSGGAAGPPGPPGPPGGPGNDGQ 218
>Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical
protein T09E8.1d protein.
Length = 547
Score = 27.1 bits (57), Expect = 4.3
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -2
Query: 371 GSPLRAVQSREQGHQDHHRGPAPRH-SEKHSASE 273
GSP + Q+ H HH PAPRH S H E
Sbjct: 25 GSPT-SDQNGNSHHHHHHLPPAPRHLSSSHHQIE 57
>Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical
protein F52B5.6 protein.
Length = 146
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 343 VSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSET 230
V +++RT+ RRP T R P+ SA R++ ++
Sbjct: 26 VRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDS 63
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 26.6 bits (56), Expect = 5.7
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -3
Query: 349 RAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPS 206
RA SR ARR + ++ P P A R +S R R PS
Sbjct: 333 RAKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPS 380
>U67953-4|AAL13329.1| 732|Caenorhabditis elegans Hypothetical
protein ZC13.3 protein.
Length = 732
Score = 26.6 bits (56), Expect = 5.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 307 RPGTARNTRRPKPTEL 260
RP T + T++PKPTE+
Sbjct: 189 RPWTVKQTKKPKPTEV 204
>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
protein T13F2.3b protein.
Length = 1076
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 366 TPPGGAEP*AGTSGPPQRP 310
T PG A P G G PQRP
Sbjct: 293 TTPGSAGPGTGPPGTPQRP 311
>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
protein T13F2.3a protein.
Length = 1074
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 366 TPPGGAEP*AGTSGPPQRP 310
T PG A P G G PQRP
Sbjct: 291 TTPGSAGPGTGPPGTPQRP 309
>AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform b
protein.
Length = 792
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 346 AVSRDIRTTTEARRPGTARNTRRPKPTELSA 254
+ S + T++ ARRP TA+ PT +A
Sbjct: 172 STSNGVATSSSARRPATAKRDTLAAPTSTAA 202
>AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform a
protein.
Length = 794
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 346 AVSRDIRTTTEARRPGTARNTRRPKPTELSA 254
+ S + T++ ARRP TA+ PT +A
Sbjct: 172 STSNGVATSSSARRPATAKRDTLAAPTSTAA 202
>AC024799-9|AAK72312.1| 293|Caenorhabditis elegans Hypothetical
protein Y49C4A.1 protein.
Length = 293
Score = 26.2 bits (55), Expect = 7.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 53 VCAVIFPPSYFQRLNYVSP 109
+CAV++P SY +N+V P
Sbjct: 233 ICAVLWPTSYMFDVNHVGP 251
>Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical
protein R11G10.1b protein.
Length = 478
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 332 HQDHHRGPAPRHSEKHSASEADRAE 258
H H R + HS KH+AS +D E
Sbjct: 19 HAYHSRPKSEEHSPKHAASSSDLFE 43
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical
protein F54F3.1 protein.
Length = 1584
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 356 AVQSREQGHQDHHRGPAPRHSEKHS 282
A Q++EQ HQ HH+ P+ + S
Sbjct: 326 ARQAQEQHHQQHHQPDQPQQQPQRS 350
>Z75549-4|CAA99919.2| 304|Caenorhabditis elegans Hypothetical
protein T19C4.4 protein.
Length = 304
Score = 25.8 bits (54), Expect = 9.9
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 97 LRLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAP 246
+R++ +T L+Q + S+ +YYN N +V S DG SL P
Sbjct: 218 IRIAFITCLVQACGTALSVIRYYNMNTSMAVTLANFIPFIS-DGLSLVQP 266
>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
protein ZC504.4d protein.
Length = 1072
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -2
Query: 371 GSPLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSP 219
G+ LR +EQ H+ R H +++ + D A+ G+ D PSP
Sbjct: 280 GALLRHPFIKEQPHEQTIRHSIKEHIDRNRRVKKDDADYEYSGSEDDEPSP 330
>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
protein ZC504.4c protein.
Length = 1096
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -2
Query: 371 GSPLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSP 219
G+ LR +EQ H+ R H +++ + D A+ G+ D PSP
Sbjct: 280 GALLRHPFIKEQPHEQTIRHSIKEHIDRNRRVKKDDADYEYSGSEDDEPSP 330
>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
protein ZC504.4b protein.
Length = 1082
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -2
Query: 371 GSPLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSP 219
G+ LR +EQ H+ R H +++ + D A+ G+ D PSP
Sbjct: 280 GALLRHPFIKEQPHEQTIRHSIKEHIDRNRRVKKDDADYEYSGSEDDEPSP 330
>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
protein ZC504.4a protein.
Length = 1087
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -2
Query: 371 GSPLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSP 219
G+ LR +EQ H+ R H +++ + D A+ G+ D PSP
Sbjct: 280 GALLRHPFIKEQPHEQTIRHSIKEHIDRNRRVKKDDADYEYSGSEDDEPSP 330
>Z22178-2|CAA80154.1| 261|Caenorhabditis elegans Hypothetical
protein F54C8.2 protein.
Length = 261
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 190 ETKQVEKVYSGDGASLSAPGSKRSALSASDAECF-SLCL 303
E + V DG+SL + SKR+ L+ +D + + LCL
Sbjct: 220 EASEALLVQMFDGSSLISAHSKRATLTTTDVQLYRRLCL 258
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 363 PPGGAEP*AGTSGPPQRPGAQAQ 295
PPG A P G GPP PGA +
Sbjct: 184 PPGEAGP-KGPPGPPGSPGAPGE 205
>U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical
protein K05F1.5 protein.
Length = 472
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 253 CCRERSETPRHRNKPSRPVWSRRSPHHFHCSI 158
CC S P+ + SRP + HFHC I
Sbjct: 97 CCPITS-LPKRLDSCSRPFCKLKKKAHFHCKI 127
>AL110500-7|CAB54490.1| 489|Caenorhabditis elegans Hypothetical
protein Y87G2A.7 protein.
Length = 489
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 97 LRLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPG 249
++LS+ L QQ+ S+ + Y ++ V KQ+ ++ GA PG
Sbjct: 419 IKLSEQLYLDQQIKLICSLCQLYPVKMINKVAIKQLLELVVFAGADFEMPG 469
>AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B
protein protein.
Length = 478
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 332 HQDHHRGPAPRHSEKHSASEADRAE 258
H H R + HS KH+AS +D E
Sbjct: 19 HAYHSRPKSEEHSPKHAASSSDLFE 43
>AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical
protein F52F10.4 protein.
Length = 692
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -3
Query: 133 IVVLTSSSWRDVIKP 89
I+ TS++W+DVIKP
Sbjct: 15 IIPTTSATWKDVIKP 29
>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 1087
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -2
Query: 371 GSPLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSP 219
G+ LR +EQ H+ R H +++ + D A+ G+ D PSP
Sbjct: 280 GALLRHPFIKEQPHEQTIRHSIKEHIDRNRRVKKDDADYEYSGSEDDEPSP 330
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -2
Query: 368 SPLRAVQSREQGHQDHH-RGPAPRHSEKHSASEAD 267
SP+ +V E+G++DHH P H A D
Sbjct: 532 SPVLSVHGGEEGYEDHHDEAPVLSVHTDHKAHSED 566
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 363 PPGGAEP*AGTSGPPQRPGA 304
PP G+ P AG+ PP P A
Sbjct: 242 PPKGSPPLAGSGSPPPPPAA 261
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 363 PPGGAEP*AGTSGPPQRPGA 304
PP G+ P AG+ PP P A
Sbjct: 263 PPKGSPPLAGSGSPPPPPAA 282
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 363 PPGGAEP*AGTSGPPQRPGA 304
PP G+ P AG+ PP P A
Sbjct: 248 PPKGSPPLAGSGSPPPPPAA 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,037,608
Number of Sequences: 27780
Number of extensions: 188467
Number of successful extensions: 1043
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -