Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_I02
         (546 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            79   7e-17
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    46   1e-06
AJ618928-1|CAF02007.1|  285|Anopheles gambiae odorant-binding pr...    24   3.8  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 79.4 bits (187), Expect = 7e-17
 Identities = 40/97 (41%), Positives = 57/97 (58%)
 Frame = +3

Query: 246 TKMSRCDFKIVLLGSEHVGKTSLXLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKXKDYSI 425
           T+   C FK+VLLG   VGK+SL LRFV  +F+     ++T+GAAF  + +         
Sbjct: 18  TQNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEY--QESTIGAAFLTQTLCIDDTTVKF 75

Query: 426 GIWDTAGSEXYEXMTRIYYXGAHAAIICYEPSSHESW 536
            IWDTAG E Y  +  +YY GA AAI+ Y+  + +S+
Sbjct: 76  EIWDTAGQERYHSLAPMYYRGAQAAIVVYDIQNSDSF 112


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 45.6 bits (103), Expect = 1e-06
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
 Frame = +3

Query: 270 KIVLLGSEHVGKTSLXLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKXKDYSIGIWDTAGS 449
           K V++G   VGKT + + +    F  E  Y  T    + A  M       S+G+WDTAG 
Sbjct: 8   KCVVVGDGTVGKTCMLISYTTDSFPGE--YVPTSFDNYSAP-MVVDGVQVSLGLWDTAGQ 64

Query: 450 EXYEXMTRIYYXGAHAAIICY---EPSSHESWT 539
           E Y+ +  + Y      +ICY    PSS E+ T
Sbjct: 65  EDYDRLRPLSYPQTDVFLICYSVASPSSFENVT 97


>AJ618928-1|CAF02007.1|  285|Anopheles gambiae odorant-binding
           protein OBPjj83a protein.
          Length = 285

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 110 FETMELIRIVTLCLKQTFIRRNKEHLYL 27
           F+  E IR +++C K   I +++  LY+
Sbjct: 162 FDAQEFIRSLSICAKLQRIPKDRRDLYV 189


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 445,469
Number of Sequences: 2352
Number of extensions: 6847
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50460840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)