Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_I01
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 28 1.3
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 27 3.0
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 27 3.0
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 27 3.0
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 27 3.0
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.0
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 26 5.3
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 25 7.0
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar... 25 7.0
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 7.0
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 9.3
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 25 9.3
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 331 LLFGIFSEENSLNPAKHFKIQSPKHSRYDRTAINAALSS 215
LLFG+ S+N + + KI S S +T IN+A S
Sbjct: 203 LLFGVKKFITSMNTSSNVKISSDPSSPSTQTTINSAAKS 241
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 97 TSKVQDSNLTLFLSMAIX*KNHVCANTLW 11
T KVQD + T S+ I + +CA TLW
Sbjct: 426 TCKVQDVSFTSPFSLIIDNEGPLCAFTLW 454
>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 26.6 bits (56), Expect = 3.0
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = -1
Query: 395 YVPRQFYDLCFCXSLEVPVYRLALWYIF 312
++PR + +C ++++ +Y L WYI+
Sbjct: 32 FIPRLSLTVKYCLAVKLLIYLLYCWYIY 59
>SPAC977.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 26.6 bits (56), Expect = 3.0
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = -1
Query: 395 YVPRQFYDLCFCXSLEVPVYRLALWYIF 312
++PR + +C ++++ +Y L WYI+
Sbjct: 32 FIPRLSLTVKYCLAVKLLIYLLYCWYIY 59
>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 26.6 bits (56), Expect = 3.0
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = -1
Query: 395 YVPRQFYDLCFCXSLEVPVYRLALWYIF 312
++PR + +C ++++ +Y L WYI+
Sbjct: 32 FIPRLSLTVKYCLAVKLLIYLLYCWYIY 59
>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 26.6 bits (56), Expect = 3.0
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = -1
Query: 395 YVPRQFYDLCFCXSLEVPVYRLALWYIF 312
++PR + +C ++++ +Y L WYI+
Sbjct: 32 FIPRLSLTVKYCLAVKLLIYLLYCWYIY 59
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 334 GLLFGIFSEENSLNPAKHFKIQSPKHS 254
G+L IF+ +NSL P K KIQS + S
Sbjct: 214 GILNTIFNSQNSLTPQK--KIQSSERS 238
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 180 PLNAPHFINTGSDESAALIAVLS*RLCFGLWI 275
P+ AP +N S+ LI V + CFG+W+
Sbjct: 296 PILAPSMMN--SEMGCVLICVAAGWACFGIWM 325
>SPAPB1A10.07c |||sphingolipid biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 198 FINTGSDESAALIAVLS*RLCFGLWILKCLA 290
F+ G +A + +++ +C GL++ CLA
Sbjct: 401 FVRIGFSYAAVWVKIITSWVCHGLYVWSCLA 431
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 7.0
Identities = 17/81 (20%), Positives = 36/81 (44%)
Frame = +2
Query: 302 VFFRKYTKEQADKLGLRGXCKNRGHRTVLGHMQGTLDKIEVMMHWLKTTGSPSSKIDKVE 481
V + ++ KE D NRG + +Q T+D +++ ++ L++ + + D
Sbjct: 1203 VSYLRHEKEIMDNKYELTILDNRGLNQQVKSLQSTVDSLQLELNRLQSLPVSNDQTDTPI 1262
Query: 482 FRNVKEISELTYDNFSIAKDH 544
+E+ L N + KD+
Sbjct: 1263 ISGSQEVQLLYESNSVLRKDN 1283
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.0 bits (52), Expect = 9.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 292 PAKHFKIQSPKHSRYDRTA 236
P+K+F + SP H +Y T+
Sbjct: 588 PSKNFTVSSPDHLKYGNTS 606
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +3
Query: 513 PMIISVLLKTIKIANRFNISV---LLVGIPEVNVICSTH 620
PMII L K +K R N+ LL + EVNV+C H
Sbjct: 242 PMIIDNL-KQLKKETRDNVEETKHLLEKLTEVNVMCDRH 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,528
Number of Sequences: 5004
Number of extensions: 41038
Number of successful extensions: 138
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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