Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_I01
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.60 
SB_13019| Best HMM Match : F5_F8_type_C (HMM E-Value=7.4e-23)          29   4.2  
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.8  
SB_24784| Best HMM Match : SURF6 (HMM E-Value=2.5)                     27   9.8  

>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 17/70 (24%), Positives = 27/70 (38%)
 Frame = +2

Query: 236 CSPIIATMFRALDFEVFGRVQGVFFRKYTKEQADKLGLRGXCKNRGHRTVLGHMQGTLDK 415
           C P +   F  LD  V   + G+  +    + A    ++  C N      L   QG +D 
Sbjct: 682 CVPDLTNQFIQLDLGVMTTISGIATQGGDNKWATFYHVKLKCDNSSRSITLSGFQGNMDA 741

Query: 416 IEVMMHWLKT 445
             V+  WL +
Sbjct: 742 NTVVTRWLSS 751


>SB_13019| Best HMM Match : F5_F8_type_C (HMM E-Value=7.4e-23)
          Length = 498

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 628 PQSWVEHITLTSGIPTNNTEILKR 557
           PQSW+ HI+L + + T   ++L+R
Sbjct: 442 PQSWINHISLRADMYTYGIDVLQR 465


>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
 Frame = +2

Query: 314 KYTKEQADKLGLRGXCKNRGHRTVLGHMQGTL-----DKIEVMMHWLKTTGSPSSKIDKV 478
           ++ +EQ   +GL        H  ++G M+ T      D  EV  HWL+ T      +++ 
Sbjct: 128 EFEEEQKKHMGLVQTRLQVAHVEIVGTMKNTYEVFKNDGQEVQAHWLRYTEKMDRMVEEA 187

Query: 479 EFRNVK-EISELT 514
              NVK  + EL+
Sbjct: 188 FRLNVKWSLQELS 200


>SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1298

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/70 (27%), Positives = 27/70 (38%)
 Frame = -2

Query: 388 QDSSMTSVFAXASKSQFIGLLFGIFSEENSLNPAKHFKIQSPKHSRYDRTAINAALSSLP 209
           Q S   S+F   S +Q IG    I       NP     + S     +   +I+    + P
Sbjct: 36  QGSPCASIFMAVSHAQGIGSFVYIDGTGTLTNPYTCINVTSNHPGIFVNRSISLIGYNFP 95

Query: 208 VLIKCGAFSG 179
           V I+CG   G
Sbjct: 96  VFIECGHEQG 105


>SB_24784| Best HMM Match : SURF6 (HMM E-Value=2.5)
          Length = 207

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 359 CKNRGHRTVLGHMQGTLDKIEVMMHWLKTTGSPSSKIDKVE 481
           CKN G++  L H +  LDK+ V  H     GS +  +  ++
Sbjct: 72  CKNTGNQQQLDHQEDILDKV-VEAHGFLKIGSTTEAVKALD 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,578,971
Number of Sequences: 59808
Number of extensions: 284234
Number of successful extensions: 691
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)