Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_I01
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   1.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 236 CSPIIATMFRALDFEVFGRVQGVFFRKYTKEQADKL 343
           C  ++AT  R LDF   GRV+    +    ++AD++
Sbjct: 324 CHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRM 359


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -2

Query: 370 SVFAXASKSQFIGLLFGIFSEENSLNPAKHFKIQSPKHSRYD 245
           S  A  S     GLL   F +++S     HF    P  S+Y+
Sbjct: 322 SAIAYVSDVFRYGLLIYDFFKDSSFRIQHHFFYPDPLASKYE 363


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
 Frame = +2

Query: 362  KNRGHRTVLGHMQGTLDKI----EVMMHWLKTTGSPSSKIDKVEFRNVKEISE 508
            K R HR    ++  TLDK+    + +    +  G+     D V+   +  +SE
Sbjct: 877  KERTHRPTFANLTQTLDKLIRSPDTLRKIAQNRGTNPLAPDAVDLTQLTSVSE 929


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,999
Number of Sequences: 438
Number of extensions: 2669
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)