Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H22
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28928-6|AAA68338.1|  188|Caenorhabditis elegans Hypothetical pr...    87   7e-18
M77697-3|AAA27898.3|  616|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z78536-4|CAB01718.3|  194|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z49887-6|CAA90059.3|  194|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>U28928-6|AAA68338.1|  188|Caenorhabditis elegans Hypothetical
           protein C44B7.7 protein.
          Length = 188

 Score = 87.4 bits (207), Expect = 7e-18
 Identities = 48/106 (45%), Positives = 59/106 (55%)
 Frame = +1

Query: 187 FLYFAYGSNLFKKRIRINNPTAEFLGVGRLDNHQLDFIKYSEHWRGASATIIPTEHAHVW 366
           F YFA+GSNL   RIR     AE+   G+LDN +L+F  YSE W+GA ATI   E   VW
Sbjct: 24  FYYFAFGSNLLGDRIRYRQKGAEYDCNGKLDNFRLEFANYSERWQGALATIKEAEGKEVW 83

Query: 367 GAIWXLHDQDLPSLXRQEXVDTNWYFAKSVNVMTSDGVSVQCRTYQ 504
           G +W + ++   SL  QE      Y    V V T  GV + CRTYQ
Sbjct: 84  GCVWKMPNEYSDSLDEQEF----GYHRLMVPVQTPKGV-ITCRTYQ 124


>M77697-3|AAA27898.3|  616|Caenorhabditis elegans Hypothetical
           protein B0303.4 protein.
          Length = 616

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 427 DTNWYFAKSVNVMT-SDGVSVQCRTYQQTINPPLRKNGEELPLERRP 564
           D+ +  A ++ ++   D  S+  RTY+  + PP  ++G     E RP
Sbjct: 144 DSQYAAAAAIAILARGDDASLMSRTYRPQLRPPTERSGNTRVDESRP 190


>Z78536-4|CAB01718.3|  194|Caenorhabditis elegans Hypothetical
           protein F09B9.4 protein.
          Length = 194

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +1

Query: 388 DQDLPSLXRQEXVDTNWYFAKSVNVMTSDGVSVQCRTYQQTINPPLRKNGEELPLERRPC 567
           D++     RQ  V      A    V+ +D    +  T  QT+      +G +LPL+++P 
Sbjct: 129 DEEKVDQFRQSRVLRFTRSADEARVLPTDAAKFKRDTITQTLKSKELNDGVQLPLDKKPT 188

Query: 568 IT 573
            T
Sbjct: 189 AT 190


>Z49887-6|CAA90059.3|  194|Caenorhabditis elegans Hypothetical
           protein F09B9.4 protein.
          Length = 194

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +1

Query: 388 DQDLPSLXRQEXVDTNWYFAKSVNVMTSDGVSVQCRTYQQTINPPLRKNGEELPLERRPC 567
           D++     RQ  V      A    V+ +D    +  T  QT+      +G +LPL+++P 
Sbjct: 129 DEEKVDQFRQSRVLRFTRSADEARVLPTDAAKFKRDTITQTLKSKELNDGVQLPLDKKPT 188

Query: 568 IT 573
            T
Sbjct: 189 AT 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,045,621
Number of Sequences: 27780
Number of extensions: 237338
Number of successful extensions: 425
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)