Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H22
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09100.2 68416.m01070 mRNA capping enzyme family protein simi...    29   1.8  
At3g09100.1 68416.m01071 mRNA capping enzyme family protein simi...    29   1.8  
At3g48560.1 68416.m05302 acetolactate synthase, chloroplast / ac...    28   5.4  
At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containi...    27   9.4  
At1g32430.1 68414.m04003 F-box family protein contains F-box dom...    27   9.4  

>At3g09100.2 68416.m01070 mRNA capping enzyme family protein similar
           to mRNA capping enzyme [Xenopus laevis] GI:7239232;
           contains Pfam profiles PF01331: mRNA capping enzyme
           catalytic domain, PF00782: Dual specificity phosphatase
           catalytic domain
          Length = 672

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -3

Query: 249 CWIVDTDTFFKQIT---PIRKIQKGIFDRIHHLT 157
           C+IVD    F+++    P R   +GI D++HH T
Sbjct: 391 CYIVDRSFRFRRVQMRFPFRHPTEGISDKVHHFT 424


>At3g09100.1 68416.m01071 mRNA capping enzyme family protein similar
           to mRNA capping enzyme [Xenopus laevis] GI:7239232;
           contains Pfam profiles PF01331: mRNA capping enzyme
           catalytic domain, PF00782: Dual specificity phosphatase
           catalytic domain
          Length = 471

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -3

Query: 249 CWIVDTDTFFKQIT---PIRKIQKGIFDRIHHLT 157
           C+IVD    F+++    P R   +GI D++HH T
Sbjct: 391 CYIVDRSFRFRRVQMRFPFRHPTEGISDKVHHFT 424


>At3g48560.1 68416.m05302 acetolactate synthase, chloroplast /
           acetohydroxy-acid synthase (ALS) nearly identical to
           SP|P17597 Acetolactate synthase, chloroplast precursor
           (EC 2.2.1.6, formerly EC 4.1.3.18) (Acetohydroxy-acid
           synthase) (ALS) {Arabidopsis thaliana}
          Length = 670

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 329 QQLLYPLNMPMFGEQYGX-YMIKIYHHXTDKXVLIQTGI 442
           Q+  +PL+   FGE     Y IK+    TD   +I TG+
Sbjct: 447 QKQKFPLSFKTFGEAIPPQYAIKVLDELTDGKAIISTGV 485


>At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 907

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 463 MTSDGVSVQCRTYQQTINPPLRKNGEELPLE 555
           M  DGVS  C TY   IN   R+N  +  +E
Sbjct: 813 MIGDGVSPDCITYTTMINELCRRNDVKKAIE 843


>At1g32430.1 68414.m04003 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 380

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 226 RIRINNPTAEFLGVGRLDNHQLDFIKY 306
           ++ +N P+ +FLG+G  +N +++ I Y
Sbjct: 119 KLEVNEPSLDFLGIGYDNNKRVEEIVY 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,088,174
Number of Sequences: 28952
Number of extensions: 210595
Number of successful extensions: 354
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)