Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H20
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)         131   6e-31
SB_13053| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)         30   1.4  
SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_42790| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12)                 29   3.3  
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              29   3.3  
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_7051| Best HMM Match : RVT_1 (HMM E-Value=0.064)                    29   4.4  
SB_50272| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score =  131 bits (316), Expect = 6e-31
 Identities = 59/89 (66%), Positives = 74/89 (83%)
 Frame = +2

Query: 380 TLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIXKKMCEIITRDVTN 559
           TLIEA +DV TTDGY+LR+FCIGFT +     +KT YA+HTQ++AI KKM +IITR+V+ 
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVST 61

Query: 560 SELREVVNKLIPDSIAKDIEKACHGIYPL 646
           ++L+EVVNKLIPDSI KDIEK+C  IYPL
Sbjct: 62  NDLKEVVNKLIPDSIGKDIEKSCQSIYPL 90


>SB_13053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 581

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/63 (26%), Positives = 34/63 (53%)
 Frame = -3

Query: 204 FNPSEAIFVALGTVDKRGADLPLAEHRRSLDIVPIFASEWVDNLLR*HLFYRPSTGLYFS 25
           F PS  ++  +  V +  A + LA H  S+ ++  + S W++++ R    + P  G+++S
Sbjct: 459 FIPSCDLWAPIAPVREPRAYVSLASHEGSIYVLGGYNSSWLNSVER----FDPREGIWYS 514

Query: 24  RPP 16
            PP
Sbjct: 515 SPP 517


>SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)
          Length = 798

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +1

Query: 4   LFRTWRS---GKIKACRRAVKKVLTKKIVDPFTRKDWYDVK 117
           +F+ WR      I+ C+R+  +   KK+ D  TR+ W +VK
Sbjct: 462 IFKFWRGRVVSAIRTCKRSFYQSKVKKLKDTNTRRWWREVK 502


>SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = -1

Query: 254 RQCQLVDQPGKLRKLFPSILPKQFSLXWVRLTSVVPTCLLLNIDGALTSYQSLRVNGSTI 75
           RQ ++  QP ++R     +    F +  V L + +P  ++LN+D  L   Q      ST+
Sbjct: 211 RQRKIKPQPNRIRPRDKELGVALFIVTVVSLLTWLPDAVVLNLDSVLAPAQYKHAVRSTL 270

Query: 74  F--FVNTFFTALRQAFIFP 24
           F  + N+F   +   +  P
Sbjct: 271 FLRYSNSFVNPIVYIYRLP 289


>SB_42790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = -1

Query: 212 LFPSILPKQFS-LXWVRLTSVVP--TCLLLNIDGALTSYQSLRVNGSTIFFVNTFFTAL 45
           L P +L  Q + L W+ + +V+   TCL + I  +L  +QS +++    F +N F  A+
Sbjct: 285 LVPLVLIHQLTVLAWLSMLAVLSLITCLFIIIGYSLQEWQSWKIHNIPDFDINNFPVAI 343


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 212  VFEVSLADLQADTDAERSFRKFRLIAEYVQ 301
            +F  + +D+QA+++    FR+F L+ EYV+
Sbjct: 1176 IFNNTFSDVQANSNQIWKFRRFELVMEYVE 1205


>SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12)
          Length = 924

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 25/88 (28%), Positives = 41/88 (46%)
 Frame = -3

Query: 414 VVFTSMLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACR 235
           V  T + +  + C F T+  SL   R +      ++R      +  N    L  +++A R
Sbjct: 101 VFVTDLRSKAKTCEFGTLQDSLIKDRIVCGIDSDSIR----ERLLRNTELTLDTAINAVR 156

Query: 234 SARETSKTLPFNPSEAIFVALGTVDKRG 151
           +A ETSKT   N  +   +A G ++KRG
Sbjct: 157 AA-ETSKTQIENLKDGASLAAGALNKRG 183


>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 1102

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -3

Query: 399  MLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSA--SVSACR 235
            ++ SM +C ++ + +SL   R +   +  +L PC Y  ++++L + +    S+S CR
Sbjct: 948  VVMSMSLCRYVHVVMSLCPCRYVHVVMSMSLCPCRYVVMSMSLCRYIHVVMSMSLCR 1004


>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 76  IVDPFTRKDWYDVKAPSMFSKRQ 144
           +V+P+  KDW D    SMFS RQ
Sbjct: 98  LVEPWRWKDWEDFTQSSMFSGRQ 120


>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 273 LRKDLSASVSACRSARETSKTLPFNPSEAIFV 178
           LRK L    S  +  RE  + L FNP E+ +V
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYV 333


>SB_7051| Best HMM Match : RVT_1 (HMM E-Value=0.064)
          Length = 756

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +1

Query: 4   LFRTWRS---GKIKACRRAVKKVLTKKIVDPFTRKDWYDVK 117
           +F+ WR      I+ C+R+  +   +K+ D  TR+ W +VK
Sbjct: 334 IFKFWRGRVVSAIRTCKRSFYQSKVEKLKDTNTRRWWREVK 374



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 31  IKACRRAVKKVLTKKIVDPFTRKDWYDVK 117
           I+ C+R+  +   KK+ D  TRK W +VK
Sbjct: 6   IRTCKRSFYQSKVKKLKDTNTRKWWREVK 34


>SB_50272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
 Frame = +2

Query: 377 QTLIEANIDVXTTDG--YVLRVFCIGF---TNKDSLSQRKTCYAQHTQVRAIXKKM-CEI 538
           + LI A I +   D    +L +   GF   T+K  + + + C+ +        +K+   +
Sbjct: 9   ENLISAGIKLVAVDFDLTILNIHTRGFWQFTSKALVQRVRPCFQEFLSSALSSEKLFVAV 68

Query: 539 ITRDVTNSELREVVNKLIPDSIAKDIE 619
           +T+    S +REV+ K +PD     IE
Sbjct: 69  VTQSPQVSLVREVLEKALPDCDTTKIE 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,064,261
Number of Sequences: 59808
Number of extensions: 428801
Number of successful extensions: 1255
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)