Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H20
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   201   3e-52
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           201   4e-52
At3g52640.1 68416.m05799 nicastrin-related contains weak similar...    29   3.6  
At2g25310.1 68415.m03028 expressed protein                             28   6.2  
At2g21630.1 68415.m02573 transport protein, putative similar to ...    27   8.2  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  201 bits (491), Expect = 3e-52
 Identities = 96/157 (61%), Positives = 123/157 (78%)
 Frame = +2

Query: 179 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 358
           TKIASEGLK RVFEVSLADLQ D D   ++RK RL AE VQGRNVLC F GMD TTDKLR
Sbjct: 54  TKIASEGLKHRVFEVSLADLQGDED--NAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLR 111

Query: 359 WMVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIXKKMCEI 538
            +VKKWQTLIEA++DV TTD Y LR+FCI FT + +   ++TCYAQ +Q+R I +KM +I
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDI 171

Query: 539 ITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 649
           + R+ ++ +L+++V K IP++I ++IEKA  GIYPL+
Sbjct: 172 MVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQ 208



 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 26/35 (74%), Positives = 31/35 (88%)
 Frame = +1

Query: 70  KKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQ 174
           KK VDPF++KDWYDVKAPS+F+ R VG TLV+RTQ
Sbjct: 18  KKAVDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQ 52


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  201 bits (490), Expect = 4e-52
 Identities = 97/157 (61%), Positives = 123/157 (78%)
 Frame = +2

Query: 179 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 358
           TKIASEGLK RVFEVSLADLQ D D   ++RK RL AE VQGRNVL  F GMD TTDKLR
Sbjct: 54  TKIASEGLKHRVFEVSLADLQNDED--NAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLR 111

Query: 359 WMVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIXKKMCEI 538
            +VKKWQTLIEA++DV TTDGY LR+FCI FT + +   ++TCYAQ +Q+R I +KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEI 171

Query: 539 ITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 649
           + ++ ++ +L+E+V K IP++I ++IEKA  GIYPL+
Sbjct: 172 MVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQ 208



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 25/35 (71%), Positives = 29/35 (82%)
 Frame = +1

Query: 70  KKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQ 174
           KK VDPF++KDWYDVKAP  F+ R VG TLV+RTQ
Sbjct: 18  KKAVDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQ 52


>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 676

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = -2

Query: 541 NDFTH-FLXDCSDLSVLGVARLA--LAQGVLIGETNAEDT*NVSIGCXHINVGFDESL 377
           N F H  L D S+++   V   A  +A+ + I  ++ +DT N ++G  H+N  F E L
Sbjct: 430 NKFYHSHLDDLSNINSSSVVAAASVVARTLYILASDNKDTSNSALGSIHVNASFVEEL 487


>At2g25310.1 68415.m03028 expressed protein 
          Length = 210

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 8/33 (24%), Positives = 21/33 (63%)
 Frame = +1

Query: 25  GKIKACRRAVKKVLTKKIVDPFTRKDWYDVKAP 123
           GK++A     ++ LT+ +++P   + +Y+++ P
Sbjct: 115 GKVQATLTETRRSLTELVLEPLKEEQYYEIREP 147


>At2g21630.1 68415.m02573 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 761

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 378 CHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSAR 226
           CHF T+H  L  + + PW + +  RP   + + L +   L  +     +AR
Sbjct: 238 CHF-TLHSVLEELGNSPWPVAADHRPARCTGVALRIAASLLGACFPGSAAR 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,470,443
Number of Sequences: 28952
Number of extensions: 298364
Number of successful extensions: 907
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)