Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H19
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    39   6e-04
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   2.1  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    27   2.7  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    27   2.7  
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    27   2.7  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.8  

>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 38.7 bits (86), Expect = 6e-04
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = +1

Query: 115 YDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQG 249
           Y+A+   F Q YY  FD  + R+ L ++Y  E S ++FEG QLQG
Sbjct: 4   YNALATQFTQFYYQTFD--SDRSQLSSLYR-EESMLSFEGAQLQG 45



 Score = 34.7 bits (76), Expect = 0.010
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +2

Query: 260 IMEKLNSLTFQKITRIVTAVDSQPMFDXXXXXXXXXXXXC--DEXPPHLYMQTFVLKPLG 433
           I+EKL SL FQ++   ++ +D+QP                  +E     Y Q F L    
Sbjct: 49  IVEKLVSLPFQRVQHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNN 108

Query: 434 DSFYVQHDIFRL 469
            ++YV +D+FRL
Sbjct: 109 GNYYVLNDLFRL 120


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 327 WESTAVTILVIF*KVKLFNFSIILTAALQLYSL 229
           W ST +  L+ F  +  +NFS ++ +++Q  SL
Sbjct: 718 WLSTVIFPLLCFTVISAYNFSTMIRSSMQFVSL 750


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -3

Query: 477 WMPKRKMSC*T*NESPSGFNTNVCMYRCGGXSSXFNXPRTLIKTPPSNIGWESTAVTILV 298
           W  + K  C +   SP G N+++ +YR    +  F+ P   I       GW     TI+ 
Sbjct: 383 WSRRYKEFCYSLGYSPEGTNSSLIVYRWPQLTKVFDIPSAAID------GWGQDLRTIMA 436

Query: 297 I 295
           I
Sbjct: 437 I 437


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 265 HNFNSSPAVVLPQRS*MKFQHCTY*QDLPVEPDHRTMCNI 146
           H+F++   V +PQ+S    Q C+Y + LP        C+I
Sbjct: 116 HSFSNPRYVAVPQKSTSPNQVCSYCEPLPNHLTKTKSCSI 155


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 18/75 (24%), Positives = 29/75 (38%)
 Frame = +2

Query: 242 CRAAVKIMEKLNSLTFQKITRIVTAVDSQPMFDXXXXXXXXXXXXCDEXPPHLYMQTFVL 421
           C    +I  K+  L FQ    +++ VDS    +                    + QTF L
Sbjct: 59  CHGQQEIHNKILDLDFQNCKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFL 118

Query: 422 KPLGDSFYVQHDIFR 466
               + ++V +DIFR
Sbjct: 119 AEQPNGYFVLNDIFR 133


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 97  FRLRCVYLSHQQKAQFQPEKFK 32
           FRL+  Y+SH +K+ F P+++K
Sbjct: 235 FRLK-KYISHSKKSAFSPQRWK 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,783
Number of Sequences: 5004
Number of extensions: 43249
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)