Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_H19
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1376 - 26528208-26528279,26529690-26529986 43 2e-04
01_06_0963 + 33441731-33442096,33442175-33442270 35 0.043
06_03_1377 - 29692895-29692899,29700435-29702190 31 0.92
12_01_0914 + 8901915-8902574 30 1.6
05_01_0105 + 696604-696846,696880-697989 30 1.6
10_03_0003 + 6865111-6865223,6867322-6867796 29 2.8
06_03_0672 + 23359510-23361253,23389969-23390203,23392078-233922... 29 3.7
12_02_0034 - 12539201-12540439 28 4.9
04_04_1489 - 33938426-33939363,33939429-33939813 28 4.9
12_02_0356 + 17915029-17916236,17932970-17933283,17933936-179342... 28 6.5
05_03_0369 - 13136146-13136175,13136237-13136908,13136926-131370... 28 6.5
01_04_0067 + 15675138-15675935 28 6.5
10_08_0269 - 16366392-16366403,16366469-16368262 27 8.5
07_03_1117 - 24096425-24097853,24097894-24098336 27 8.5
>08_02_1376 - 26528208-26528279,26529690-26529986
Length = 122
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/65 (38%), Positives = 35/65 (53%)
Frame = +1
Query: 118 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGCC*NYGKIK*FDFSKN 297
DA+ K FV+ YY FD R LV++Y + S +TFEG Q G GK+ F++
Sbjct: 4 DAVAKAFVEHYYRTFD--TNRPALVSLYQ-DGSMLTFEGQQFLGAAAIAGKLGSLPFAQC 60
Query: 298 H*NSN 312
H + N
Sbjct: 61 HHDIN 65
Score = 36.7 bits (81), Expect = 0.014
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +2
Query: 251 AVKIMEKLNSLTFQKITRIVTAVDSQP---MFDXXXXXXXXXXXXCDEXPPHLYMQTFVL 421
A I KL SL F + + VD QP DE P + Q F L
Sbjct: 45 AAAIAGKLGSLPFAQCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLK-FSQMFQL 103
Query: 422 KPLGDSFYVQHDIFRL 469
P G +FYVQ+D+FRL
Sbjct: 104 LPAGGNFYVQNDMFRL 119
>01_06_0963 + 33441731-33442096,33442175-33442270
Length = 153
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +1
Query: 112 QYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQG 249
Q D + + FV+ YY FD RA L +Y +TS ++FEG + G
Sbjct: 24 QCDVVARAFVEYYYQTFD--TNRAALAALYG-QTSMLSFEGHMVAG 66
>06_03_1377 - 29692895-29692899,29700435-29702190
Length = 586
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = -3
Query: 192 NKICPLSRIIEQCVILLHKTFTDCIVLRIERHLD*DVSICHTNKKPNSSRKNSRCDELTK 13
+K+ ++ +E+ ++LL + F D + R ER + S N++PN + N RC E +
Sbjct: 225 SKVNEVNEDLEEEMVLLARRFNDLLGRRKERGRGSN-SNRRRNRRPNKTLSNLRCFECGE 283
Query: 12 RG 7
+G
Sbjct: 284 KG 285
>12_01_0914 + 8901915-8902574
Length = 219
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -3
Query: 165 IEQCVILLHKTFTDCIVLRIERHLD*DVSICHTNKKPNSSRKNSRCDELTKRG 7
+E+ + LL + F D + R ER + S N++PN + N RC E ++G
Sbjct: 153 LEEEIALLDRRFNDLLGRRKERGKGSNSST-RRNRRPNKTLSNLRCFECGEKG 204
>05_01_0105 + 696604-696846,696880-697989
Length = 450
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = -3
Query: 189 KICPLSRIIEQCVILLHKTFTDCIVLRIERHLD*DVSICHTNKKPNSSRKNSRCDELTKR 10
K+ ++ +E+ + LL + F D + R ER + S N++PN + N RC E ++
Sbjct: 215 KVNEVNEDLEEEISLLARRFNDLLGRRKERESGSN-SNRRRNRRPNKTLSNLRCFECGEK 273
Query: 9 G 7
G
Sbjct: 274 G 274
>10_03_0003 + 6865111-6865223,6867322-6867796
Length = 195
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -3
Query: 165 IEQCVILLHKTFTDCIVLRIERHLD*DVSICHTNKKPNSSRKNSRCDELTKRG 7
+E+ LL + F D + R +R D + S N++PN + N RC E ++G
Sbjct: 125 LEEHTALLARRFNDLLGRRKQRGRDSN-SNRRRNRRPNKTLSNLRCFECGEKG 176
>06_03_0672 +
23359510-23361253,23389969-23390203,23392078-23392234,
23392535-23392597
Length = 732
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = -3
Query: 189 KICPLSRIIEQCVILLHKTFTDCIVLRIERHLD*DVSICHTNKKPNSSRKNSRCDELTKR 10
K+ + +E+ + LL + F D + R ER + S N++PN + N RC E ++
Sbjct: 226 KVNEANENLEEEIALLARRFNDLLGRRKERGRGCN-SNRRRNRRPNKTLSNLRCFECGEK 284
Query: 9 G 7
G
Sbjct: 285 G 285
>12_02_0034 - 12539201-12540439
Length = 412
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -3
Query: 165 IEQCVILLHKTFTDCIVLRIERHLD*DVSICHTNKKPNSSRKNSRCDELTKRG 7
+E+ + LL + F D + R ER + S N++PN + N RC E ++G
Sbjct: 234 LEEEIALLARKFNDLLGRRKERGRGSN-SNRRRNRRPNKTLSNLRCFECGEKG 285
>04_04_1489 - 33938426-33939363,33939429-33939813
Length = 440
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = -3
Query: 192 NKICPLSRIIEQCVILLHKTFTDCIVLRIERHLD*DVSICHTNKKPNSSRKNSRCDELTK 13
+K+ ++ +E+ ++ L + F D + R ER + S N++PN + N RC E +
Sbjct: 137 SKVNEVNEDLEEEMVFLTRRFNDLLGRRKERGRGSN-SNRRRNRRPNKTLSNLRCFECGE 195
Query: 12 RG 7
G
Sbjct: 196 NG 197
>12_02_0356 +
17915029-17916236,17932970-17933283,17933936-17934244,
17934613-17935439
Length = 885
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -3
Query: 165 IEQCVILLHKTFTDCIVLRIERHLD*DVSICHTNKKPNSSRKNSRCDELTKRG 7
+E+ + LL + F D + R ER + S N++PN + N RC E ++G
Sbjct: 209 LEEEIALLARRFNDLLGKRNERGRGSN-SNRRRNRRPNKTLTNLRCFECGEKG 260
>05_03_0369 -
13136146-13136175,13136237-13136908,13136926-13137016,
13137184-13137416,13137459-13137731,13137877-13138265,
13138325-13139156,13139847-13139922,13140027-13140414,
13141395-13141748,13142069-13142333,13143366-13143716
Length = 1317
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/65 (24%), Positives = 36/65 (55%)
Frame = +2
Query: 113 STMQSVKVLCNNITHCSMIRLNGQILLICTMLKLHS*PLREYNCRAAVKIMEKLNSLTFQ 292
S+ + ++VL ++ HCS+ +L I + + LH+ +R+ ++ ++ KLN L +
Sbjct: 565 SSAKCLRVL--DLNHCSIQKLPDSIYQLKQLQYLHAPQVRDGVIPESISMLSKLNYLNLR 622
Query: 293 KITRI 307
+ +I
Sbjct: 623 ESPKI 627
>01_04_0067 + 15675138-15675935
Length = 265
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 78 ICHTNKKPNSSRKNSRCDE 22
+CH K + RK +RCDE
Sbjct: 224 LCHVRKTASKKRKRNRCDE 242
>10_08_0269 - 16366392-16366403,16366469-16368262
Length = 601
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = -3
Query: 192 NKICPLSRIIEQCVILLHKTFTDCIVLRIERHLD*DVSICHTNKKPNSSRKNSRCDELTK 13
+K+ ++ +E+ +ILL + F D + R ER S N++ N + N RC E +
Sbjct: 225 SKVNEVNEDLEEEMILLARRFNDLLERRKERGRG-SNSNRRRNRRLNKTLSNLRCFEYGE 283
Query: 12 RG 7
+G
Sbjct: 284 KG 285
>07_03_1117 - 24096425-24097853,24097894-24098336
Length = 623
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 316 SSYYSSDFLKSQTI*FFHNFNSSPAVVL 233
+SYY SD K++ +HN+ S A +L
Sbjct: 199 TSYYKSDHFKNRPYDPYHNYTSPTAAIL 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,566,592
Number of Sequences: 37544
Number of extensions: 260984
Number of successful extensions: 446
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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