Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H19
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)                  36   0.033
SB_7009| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.53 
SB_15686| Best HMM Match : DUF1168 (HMM E-Value=0.87)                  29   2.1  
SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_30571| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/49 (38%), Positives = 31/49 (63%)
 Frame = +1

Query: 103 LNPQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQG 249
           ++  ++ + K FV+ YY++FD  + R NL  +Y    S +TFEG Q+QG
Sbjct: 113 MSQPFEQVAKQFVEYYYSVFD--SNRNNLAPLYQ-PGSMLTFEGAQIQG 158



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +2

Query: 260 IMEKLNSLTFQKITRIVTAVDSQPM 334
           I+ KL S+ FQ++  ++T+ D+QP+
Sbjct: 162 IVAKLVSMPFQQVLHVITSQDAQPL 186


>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
          Length = 662

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
 Frame = +2

Query: 260 IMEKLNSLTFQKITRIVTAVDSQPMFDXXXXXXXXXXXXCDEXPPHLYMQTFVLKPLGD- 436
           I EK+  L F      +  VDS                  +  P   +MQTFVL P  D 
Sbjct: 60  IYEKIKDLNFVDCRTKILQVDSHSTLGSGVVVQVSGELSNNGQPMRKFMQTFVLAPGEDI 119

Query: 437 -SFYVQHDIFR 466
             +YV +DIFR
Sbjct: 120 RKYYVHNDIFR 130


>SB_7009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 375 FNXPRTLIKTPPSNIGWESTAVTILVIF*KVKLFNFSIIL 256
           FN  R     PPSN+ W   AV + ++F  VK  N+ + L
Sbjct: 25  FNQNRKKFGAPPSNLVWALYAVFVGILFSVVKFLNYRLHL 64


>SB_15686| Best HMM Match : DUF1168 (HMM E-Value=0.87)
          Length = 488

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = -3

Query: 222 HE*SFNIVHINKICPLSRIIEQCVILLHKTFTDCIVLRIERHLD*DVSICHTNKKPNSSR 43
           HE   ++VH    C +SR+  +C   + +   +C + R+  + + D  + H   K + SR
Sbjct: 364 HECDDHVVHDQPKCDMSRVYHECDDNVVQDQLECDMSRV--YHECDDHVVHDQLKCDMSR 421

Query: 42  KNSRCDE 22
               CD+
Sbjct: 422 VYHECDD 428


>SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 214 KFQHCTY*QDLPVEPDHRTMCNIVAQNL 131
           KF  C Y +++ VE DH+ +  IV + L
Sbjct: 418 KFDQCVYGREVTVESDHKPLAAIVTKPL 445


>SB_30571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = -3

Query: 420 NTNVCMYRCGGXSSXFNXPRTLIKTPPSNIGWESTAVTILVIF*KVKLFNFSIILTAALQ 241
           NTN  +Y     ++ F    TL   PP    + ST  T+ +I      +  +II+T  L 
Sbjct: 14  NTNTIIYTTQQLNNYFTNTNTLDPVPPPPSPF-STLTTVTII---TLGYTSTIIITLCLH 69

Query: 240 LYSLKGH 220
            YS   H
Sbjct: 70  YYSQHHH 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,654,335
Number of Sequences: 59808
Number of extensions: 334289
Number of successful extensions: 532
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)