Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H19
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical pr...    58   6e-09
Z81035-9|CAB02734.1|  628|Caenorhabditis elegans Hypothetical pr...    29   2.5  

>Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical
           protein R05D11.3 protein.
          Length = 133

 Score = 57.6 bits (133), Expect = 6e-09
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
 Frame = +2

Query: 260 IMEKLNSLTFQKITRIVTAVDSQPMFDXXXXXXXXXXXXCDEXPPHLYMQTFVLKPLGD- 436
           I++K  +L F KI R +T +DSQP++D             DE P + + Q F+L+P    
Sbjct: 58  ILQKFTTLGFTKIQRAITVIDSQPLYDGSIQVMVLGQLKTDEDPINPFSQVFILRPNNQG 117

Query: 437 SFYVQHDIFRLGIH 478
           S+++ ++IFRL +H
Sbjct: 118 SYFIGNEIFRLDLH 131



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
 Frame = +1

Query: 97  MALNPQYDAIGKGFVQQYYTLFD--DPAQRA-NLVNMYNVETSFMTFEGVQLQG 249
           M+ NP Y+++ K F+Q YY+ FD  D   RA  L ++Y+ E S+MTFEG Q +G
Sbjct: 1   MSFNPDYESVAKAFIQHYYSKFDVGDGMSRAQGLSDLYDPENSYMTFEGQQAKG 54


>Z81035-9|CAB02734.1|  628|Caenorhabditis elegans Hypothetical
           protein C15H11.3 protein.
          Length = 628

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +1

Query: 106 NPQYDAIGKGFVQQYYTLFDDP---AQRANLVNMYNVETSFMTFEGVQLQG 249
           NPQ   + + FV  Y+  +D P     R NL N Y+ + S  +     L+G
Sbjct: 359 NPQIRVLVEQFVTSYFDFYDGPDGQRTRRNLHNAYDADASTFSLTIEHLRG 409


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,163,096
Number of Sequences: 27780
Number of extensions: 254618
Number of successful extensions: 452
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)