Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H19
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.0  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   3.9  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   3.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.9  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -2

Query: 394 WRXFVTXQXSKDIN*NASIKHWLGIHSSYYSSDFL---KSQTI*FFHNFNSSPAV 239
           W   +    SK I  N   K+WL +H+SY S   L   K  +I  +H + +  A+
Sbjct: 418 WDNSINAGFSK-IAENLLEKNWLPVHTSYKSGLNLEQEKKDSISHYHLYTNLTAL 471


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 331 WLGIHSSYYSSDFLKSQT 278
           W+GIH    +SD   +QT
Sbjct: 353 WMGIHEPETTSDATSAQT 370


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = +1

Query: 139 VQQYYTLFD---DPAQRANLVNMYNVETSFMTFEGV 237
           + Q YT FD   DP +  N+  +  V   +M   G+
Sbjct: 440 LNQLYTAFDVLTDPKKNPNVYKVETVGDKYMAVSGL 475


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 331 WLGIHSSYYSSDFLKSQT 278
           W+GIH    +SD   +QT
Sbjct: 353 WMGIHEPETTSDATSAQT 370


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = +1

Query: 139 VQQYYTLFD---DPAQRANLVNMYNVETSFMTFEGV 237
           + Q YT FD   DP +  N+  +  V   +M   G+
Sbjct: 440 LNQLYTAFDVLTDPKKNPNVYKVETVGDKYMAVSGL 475


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,748
Number of Sequences: 438
Number of extensions: 3203
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)