Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_H19
(593 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g27310.1 68414.m03327 nuclear transport factor 2 (NTF2), puta... 45 4e-05
At1g27970.1 68414.m03426 nuclear transport factor 2 (NTF2), puta... 42 2e-04
At1g11570.1 68414.m01328 nuclear transport factor 2 (NTF2), puta... 39 0.003
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 29 2.3
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 29 2.3
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 29 3.1
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 29 3.1
At4g10560.1 68417.m01729 DC1 domain-containing protein contains ... 27 7.1
At3g07610.1 68416.m00911 transcription factor jumonji (jmjC) dom... 27 7.1
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 27 9.4
>At1g27310.1 68414.m03327 nuclear transport factor 2 (NTF2),
putative similar to Swiss-Prot:P33331 nuclear transport
factor 2 (NTF-2) (Nuclear transport factor P10)
[Saccharomyces cerevisiae]
Length = 122
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +1
Query: 118 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQG 249
DA+ K FV+ YY+ FD A R LV++Y E S +TFEG ++QG
Sbjct: 4 DAVAKAFVEHYYSTFD--ANRPGLVSLYQ-EGSMLTFEGQKIQG 44
Score = 27.9 bits (59), Expect = 5.4
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Frame = +2
Query: 260 IMEKLNSLTFQKITRIVTAVDSQPMFDXXXXXXXXXXXXCDEXPPHL--YMQTFVLKPLG 433
I+ KL L FQ+ +T VD QP H + Q F L
Sbjct: 48 IVAKLTGLPFQQCKHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLISNQ 107
Query: 434 DSFYVQHDIFRL 469
++YV +DIFRL
Sbjct: 108 GNYYVFNDIFRL 119
>At1g27970.1 68414.m03426 nuclear transport factor 2 (NTF2),
putative similar to Swiss-Prot:P33331 nuclear transport
factor 2 (NTF-2) (Nuclear transport factor P10)
[Saccharomyces cerevisiae]
Length = 126
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +1
Query: 118 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQG 249
DA+ K FV+ YY+ FD R L +Y E S +TFEG ++QG
Sbjct: 7 DAVSKAFVEHYYSTFD--TNRVGLAGLYQ-EASMLTFEGQKIQG 47
Score = 31.5 bits (68), Expect = 0.44
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +2
Query: 260 IMEKLNSLTFQKITRIVTAVDSQPM--FDXXXXXXXXXXXXCDEXPPHLYMQTFVLKPLG 433
I+ KL SL FQ+ ++ VD QP E + Q F L P
Sbjct: 51 IVAKLTSLPFQQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTP 110
Query: 434 D-SFYVQHDIFRL 469
SFYV +DIFRL
Sbjct: 111 QGSFYVFNDIFRL 123
>At1g11570.1 68414.m01328 nuclear transport factor 2 (NTF2),
putative similar to Swiss-Prot:P33331 nuclear transport
factor 2 (NTF-2) (Nuclear transport factor P10)
[Saccharomyces cerevisiae]
Length = 127
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1
Query: 118 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGCC*NYGKIK*FDFSKN 297
+ + FV YY LFD+ R++L ++YN TS +TFEG + G K+K F +
Sbjct: 10 EEVASAFVNHYYHLFDN--DRSSLSSLYN-PTSLLTFEGQTIYGVDNISNKLKQLPFDQC 66
Query: 298 H 300
H
Sbjct: 67 H 67
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 106 NPQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMT 225
+P + +G+ FV+QYY + Q LV+ + ++SF+T
Sbjct: 9 SPGAEVVGRAFVEQYYHILH---QSPGLVHRFYQDSSFLT 45
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = +2
Query: 260 IMEKLNSLTFQKITRIVTAVDSQPMFDXXXXXXXXXXXXCDEXPPHLYMQTFVLKPLGDS 439
I +K+ SL ++ T + D+Q + ++ + Q+F L P
Sbjct: 62 INDKILSLKYEDYTAEIETADAQESHERGVIVLVTGRLTGNDNVRKKFSQSFFLAPQDKG 121
Query: 440 FYVQHDIFR 466
++V +D+FR
Sbjct: 122 YFVLNDVFR 130
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 106 NPQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMT 225
+P + +G+ FV+QYY + Q LV+ + ++SF+T
Sbjct: 9 SPGAEVVGRAFVEQYYHILH---QSPGLVHRFYQDSSFLT 45
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = +2
Query: 260 IMEKLNSLTFQKITRIVTAVDSQPMFDXXXXXXXXXXXXCDEXPPHLYMQTFVLKPLGDS 439
I +K+ SL ++ T + D+Q + ++ + Q+F L P
Sbjct: 62 INDKILSLKYEDYTAEIETADAQESHERGVIVLVTGRLTGNDNVRKKFSQSFFLAPQDKG 121
Query: 440 FYVQHDIFR 466
++V +D+FR
Sbjct: 122 YFVLNDVFR 130
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +2
Query: 260 IMEKLNSLTFQKITRI-VTAVDSQPMFDXXXXXXXXXXXXCDEXPPHLYMQTFVLKPLGD 436
I E+L LT+ +T+ D+Q + +E + QTF L P
Sbjct: 63 ISEELKRLTYGDCNSAEITSYDTQESHNGGFLLFVTGYFTLNERSRRKFTQTFFLAPQEK 122
Query: 437 SFYVQHDIFR 466
F+V +DI R
Sbjct: 123 GFFVLNDILR 132
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 260 IMEKLNSLTFQKITRI-VTAVDSQPMFDXXXXXXXXXXXXCDEXPPHLYMQTFVLKPLGD 436
I E++ S ++ I++I + DSQ + E + Q+F L PL
Sbjct: 62 INEQIMSFDYE-ISKIQILTADSQASYMNGVVTLVTGLLTVKEGQRMRFSQSFFLVPLNG 120
Query: 437 SFYVQHDIFR 466
S++V +D+FR
Sbjct: 121 SYFVLNDVFR 130
>At4g10560.1 68417.m01729 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 703
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 143 NNITHCSMIRLNGQILLICTMLKLHS*PLRE 235
N++TH +I L QI+ + + + LHS P E
Sbjct: 26 NSVTHSEIISLIAQIISLVSSMDLHSQPKPE 56
>At3g07610.1 68416.m00911 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 1027
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 190 QDLPVEPDHRTMCNIVAQNLYRLHR 116
QD PD R C+I ++Y LHR
Sbjct: 273 QDAKAFPDERLYCDICKTSIYDLHR 297
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +1
Query: 100 ALNPQYDAIGKGFVQQYYT-LFDDPAQRANLVNMYNVETSFMTFEGV 237
+++PQ+ +G GFVQ+YY L+D ++ V+ + +E S ++ G+
Sbjct: 9 SVDPQF--VGNGFVQEYYNHLYDSTSE----VHKFYLEDSMISRPGL 49
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,053,168
Number of Sequences: 28952
Number of extensions: 221674
Number of successful extensions: 370
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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