Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H17
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    83   3e-17
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   4.1  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.1  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   7.2  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    25   7.2  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   9.5  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 83.0 bits (196), Expect = 3e-17
 Identities = 52/132 (39%), Positives = 71/132 (53%)
 Frame = +2

Query: 206 DIXIEGFNPSAEEADEGTDSAVESGVDIXLNHRLVETYAFGDKKSYTXXXXXXXXXXXXX 385
           D+ I G NPSAE+A+E  +   E+  ++  + RL  T +F DKKSY              
Sbjct: 42  DVDI-GANPSAEDAEENAEEGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKAR 98

Query: 386 XEEXAPDQXEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYTDFDGTQIPIM 565
            +E  P++  VF+ N    +K IL  FK+  F+ GESMD D MV +M Y + DG   P M
Sbjct: 99  LQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYM 156

Query: 566 MFFKHGLQQXKF 601
           +FFK GL   KF
Sbjct: 157 IFFKDGLVSEKF 168



 Score = 35.1 bits (77), Expect = 0.009
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +1

Query: 115 DEMFSDTYKMKLVDEVIYEVTGRLVTRAQG 204
           DE+ SD Y +K VD+++YE   ++VT  QG
Sbjct: 11  DELVSDAYDLKEVDDIVYEADCQMVTVKQG 40


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 642 ASLELLSYFLXNI*NFXCCRPCLKNIMIGICVPSKSVY 529
           AS ELL+       NF   R CL+N ++  CVP   VY
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVPFLGVY 817


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -1

Query: 557 VFAYHQSLYIPSWQPC-HHN 501
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 552 KYQS*CFSNMVYNXRNSKCXIRNNSIIP 635
           +Y S CF N +++  + K    N+SI+P
Sbjct: 763 QYHSFCFINNLFSKSSLKAISSNDSIVP 790


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 73  NPSK*RSIRTLSLADEMFSDTYKMKLVDE 159
           NP+  +  + +SLA E+ SD  + KL D+
Sbjct: 38  NPNGEKKFKEISLAYEVLSDPQRRKLYDQ 66


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 481 ELKFLKPAEDVFHYFVHVCFKYFXLVRRXL 392
           +  FLKP   ++ YF+ +  +Y  L+R  +
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIREPI 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,295
Number of Sequences: 5004
Number of extensions: 43137
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)