Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H17
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.016
SB_59206| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)                   28   5.7  

>SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 13/144 (9%)
 Frame = +2

Query: 206 DIXIEGFNPSAEEADEGTDSAVESGVDIXLNHRLVETYAFGDKKSYTXXXXXXXXXXXXX 385
           D  + G N SAE+A +  +    +G ++ + +RLVE      K+                
Sbjct: 47  DENLIGGNKSAEDACDDVEDGCTTGCNVVMANRLVEIPYKTFKELLAEFKPYIKKVKEHM 106

Query: 386 XEEXAPD-QXEVFKTNMNKVMKDILGRFKELQFFTGESMDCD-----GMVAMMEY----- 532
            EE  PD + + F+      +  I   FKE QFF     DCD       +  M Y     
Sbjct: 107 KEEGCPDEEVKGFEKAAMDYILSIKKNFKEYQFF---QPDCDLGGGAHCIVFMWYPEKDL 163

Query: 533 --TDFDGTQIPIMMFFKHGLQQXK 598
              D DG   P++  FKH ++Q K
Sbjct: 164 RGVDQDGFS-PVLTVFKHAVKQVK 186


>SB_59206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = -1

Query: 203 PCALVTNLPVTS*ITSSTNFIL*VSENISSASDNVLIDLHFDGLEAIKNN 54
           PC L+  L  T      T+ +L  +E++SSA+ + + D+ FDG++ I NN
Sbjct: 106 PCLLLLTLVFT------TSQVLTTAEDVSSATIDFVGDISFDGIQKIFNN 149


>SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 570 NIMIGICVPSKSVYSIMATMPSQSID 493
           N+ I +CVPS SV  +   MPS+  D
Sbjct: 633 NLHIYLCVPSTSVLKLTIIMPSRQFD 658


>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
          Length = 3035

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 568  HHDWYLRTIKVCIFHHGNHAITIHRLPSKE 479
            H   YL    VC+     H  TIH++ S E
Sbjct: 2439 HSGQYLEAYTVCVKRQQQHGFTIHKISSAE 2468


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,385,687
Number of Sequences: 59808
Number of extensions: 309718
Number of successful extensions: 553
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)