Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H17
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical p...    80   1e-15
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p...    28   6.6  
U23176-4|AAC46716.1|  632|Caenorhabditis elegans Fem-3 mrna bind...    28   6.6  
AC006656-6|AAF39879.1|  614|Caenorhabditis elegans Fem-3 mrna bi...    28   6.6  

>Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical
           protein F25H2.11 protein.
          Length = 181

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 50/140 (35%), Positives = 72/140 (51%), Gaps = 9/140 (6%)
 Frame = +2

Query: 206 DIXIEGFNPSAEEA--DEGTDSAVESGVDIXLNHRLVETYAFGDKKSYTXXXXXXXXXXX 379
           +I + G NPSAEE   D+G+D  VE G+DI LNH+LVE   + D   +            
Sbjct: 41  EIVLAGSNPSAEEGAEDDGSDEHVERGIDIVLNHKLVEMNCYEDASMFKAYIKKFMKNVI 100

Query: 380 XXXEEXAPDQXEV--FKTNMNKVMKDILG--RFKELQFFTGESM---DCDGMVAMMEYTD 538
              E+   D+ +V  FK  +   +  +L   RFK L FF GE       +G VA++EY D
Sbjct: 101 DHMEKNNRDKADVDAFKKKIQGWVVSLLAKDRFKNLAFFIGERAAEGAENGQVAIIEYRD 160

Query: 539 FDGTQIPIMMFFKHGLQQXK 598
            DGT++P +M  K  + + K
Sbjct: 161 VDGTEVPTLMLVKEAIIEEK 180



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 15/30 (50%), Positives = 23/30 (76%)
 Frame = +1

Query: 115 DEMFSDTYKMKLVDEVIYEVTGRLVTRAQG 204
           DE+ SD++ MKLVD+++YE  G+ V R +G
Sbjct: 11  DELSSDSFPMKLVDDLVYEFKGKHVVRKEG 40


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 574  EKHHDWYLRTIKVCIFHHGNHAITIHRLPSKE-LKFLKPAEDVFHY 440
            ++HH W      VC F +G+H +T+  + SK  ++F       FH+
Sbjct: 2092 DEHHPW-----PVCQFDNGDHYVTVQPMASKRYIEFKSRIRSKFHF 2132


>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
            protein F30A10.10 protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 224  FNPSAEEADEGTDSAVESG-VDIXLNH 301
            F+PSA +ADE  D A E G VD  L H
Sbjct: 1236 FSPSASQADETGDRAPERGFVDTALAH 1262


>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
            protein F30A10.10 protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 224  FNPSAEEADEGTDSAVESG-VDIXLNH 301
            F+PSA +ADE  D A E G VD  L H
Sbjct: 1236 FSPSASQADETGDRAPERGFVDTALAH 1262


>U23176-4|AAC46716.1|  632|Caenorhabditis elegans Fem-3 mrna binding
           factor protein 2 protein.
          Length = 632

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 594 RNSKCXIRNNSIIPNWRLD 650
           RNS+   R+N+++P W LD
Sbjct: 156 RNSRSFTRSNNVLPTWSLD 174


>AC006656-6|AAF39879.1|  614|Caenorhabditis elegans Fem-3 mrna
           binding factor protein 1 protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 594 RNSKCXIRNNSIIPNWRLD 650
           RNS+   R+N+++P W LD
Sbjct: 154 RNSRSFTRSNNVLPTWSLD 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,951,000
Number of Sequences: 27780
Number of extensions: 234334
Number of successful extensions: 536
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)