Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H16
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53690.1 68416.m05929 zinc finger (C3HC4-type RING finger) fa...    28   6.1  
At5g48390.1 68418.m05983 tetratricopeptide repeat (TPR)-containi...    27   8.1  

>At3g53690.1 68416.m05929 zinc finger (C3HC4-type RING finger)
           family protein contains a Zinc finger, C3HC4 type (RING
           finger) signature, PROSITE:PS00518 and a IBR domain,
           Pfam:PF01485
          Length = 320

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 221 ENLLPTRKMYQYWNNPKHPTALHQESPI 304
           EN    RK+ + W  P H T +  ESPI
Sbjct: 48  ENYDRDRKLQRLWVYPPHKTVIKSESPI 75


>At5g48390.1 68418.m05983 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 900

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 502 SWYCVICCNLSTLCFSLKSGEIAGQVLR 419
           +W+   C NL + C   K  E+ G+ LR
Sbjct: 612 NWFAATCWNLGSRCGKEKKYELCGEFLR 639


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,960,022
Number of Sequences: 28952
Number of extensions: 246185
Number of successful extensions: 503
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)