Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H11
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    64   1e-11
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    26   4.1  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    26   5.4  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   7.1  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   7.1  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   9.4  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   9.4  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   9.4  

>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 9/117 (7%)
 Frame = +2

Query: 299 AXDWALMHGVGMRDKKHFNKDVIQIA---PFILLPSPFPKTEFMKAVELQPVLNELMHKV 469
           A D+A  HGV   +    +K+   IA   P  L PS  P   F++AV +Q   N+L  K+
Sbjct: 18  ARDFAFAHGVVFTELS-VSKEGRNIATQIPITLFPSVIPHGAFVEAVSVQKAYNKLYAKI 76

Query: 470 AHDDEFLEQTLQNALQVDEFTANLYDIWLKVK------NEGISQPISLGMLRSDIML 622
           A+D EFL   LQ+  + DEF   L++++ K +       E   QP+SLG+ RSD M+
Sbjct: 77  ANDYEFLRLHLQSITKYDEFMNKLWNLYQKHREAVAHLKENQFQPLSLGVFRSDYMV 133


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +2

Query: 338 DKKHFNKDVIQIAPFILLPSPFPKTEFMKAVELQPVLNELMHKVAHDDEFLEQTLQNALQ 517
           D+ + +   I+   F+ +P+PF K++   AVE   + + + H     D   +Q ++ A Q
Sbjct: 369 DRLNLSFGTIKEFDFVGVPAPFTKSQVDSAVE--QLKSRIAHFKEQQDSVTKQRIEKAKQ 426


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 188 ILTRSFQFFVSKMSQARLAPCLQLPLENKTLVNVIEKAXD 307
           ++ R F FF+S      +  C Q+ L+N+T  ++IE   D
Sbjct: 208 VVCRLFDFFISSHPLTVVYTCAQVVLDNRT--SIIELLWD 245


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 354 LKCFLSLIPTPCMRAQSLAFSITF 283
           LK F+S +P PC  +  L + IT+
Sbjct: 346 LKYFISALPLPCFLSVQLRWFITY 369


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 374 APFILLPSPFPKTEFMKAVELQPVLNELMHK--VAHDDEFLEQ 496
           APF  LP P    E+ +A+E QP+  E++ K    H  E +EQ
Sbjct: 235 APFERLPDPRMFPEYYQAIE-QPMALEVIQKKLSKHRYETIEQ 276


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +2

Query: 422 KAVELQPVLNELMHKV-AHDDEFLEQTLQNALQVDEFTANLYDIWLKVKNEGISQ 583
           K   +Q +LN L  K+ AH ++F EQT ++  + +E   +L +   KVKN+  S+
Sbjct: 371 KKTLVQNLLNSLEGKLQAHLEKF-EQTERDISEKNEEVKSLREKAAKVKNDCTSE 424


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = -2

Query: 528 NSSTCRAFCKVCSKNSSSWATLCMSSFKTGCSSTAFINSVFGKG-DGNSINGAI*ITSLL 352
           +SST  +     S NS++ AT   S+  +  SSTA  NS        +S+N     T+  
Sbjct: 151 SSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATS 210

Query: 351 KCFLSLIPTPCMRAQSLAFS 292
               S   +    + SLA S
Sbjct: 211 SSLSSTAASNSATSSSLASS 230


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -2

Query: 504 CKVCSKNSSSWAT--LCMSSFKTGCSSTAF 421
           CK+C++  SS  T  +C S++   C    F
Sbjct: 299 CKLCAQEGSSLVTCCICQSNYHYACVEAPF 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,425
Number of Sequences: 5004
Number of extensions: 44770
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)