Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_H11
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0593 + 20874459-20874575,20875258-20875427,20875597-208756... 79 4e-15
12_01_0933 - 9263023-9263146,9263224-9263416,9263495-9263634,926... 66 3e-11
02_04_0076 - 19486360-19488723 33 0.20
11_04_0305 - 16162063-16162096,16162282-16164365,16165283-161653... 32 0.45
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 29 3.2
11_06_0669 - 26084906-26087350 28 5.6
01_01_0019 + 141084-141631,142191-142431,142563-142680,142749-14... 28 7.4
03_05_0823 - 27970038-27970258,27970279-27970544,27970608-279706... 27 9.7
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915 27 9.7
>12_02_0593 +
20874459-20874575,20875258-20875427,20875597-20875672,
20875764-20875894,20876570-20876692,20876780-20876893,
20877163-20877239,20877405-20877472,20877740-20877861,
20878041-20878180,20878411-20878603,20878692-20878827
Length = 488
Score = 78.6 bits (185), Expect = 4e-15
Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 5/119 (4%)
Frame = +2
Query: 287 VIEKAXDWALMHGVGMRDKKHFNKDVIQ-----IAPFILLPSPFPKTEFMKAVELQPVLN 451
++ +A W +HG+ + D+ + APF LLP+ P++ + +A EL P+ N
Sbjct: 18 MVREATAWCALHGLVVGDRADPRSGTVPGVGLVHAPFSLLPTHLPESHWRQACELAPIFN 77
Query: 452 ELMHKVAHDDEFLEQTLQNALQVDEFTANLYDIWLKVKNEGISQPISLGMLRSDIMLES 628
EL+ +V+ D +FL+ +L QVD+FT+ L +I K+ + I LG+ RSD ML+S
Sbjct: 78 ELVDRVSLDGDFLQDSLSKTKQVDDFTSRLLEIHRKMMEINKEENIRLGLHRSDYMLDS 136
>12_01_0933 -
9263023-9263146,9263224-9263416,9263495-9263634,
9263760-9263881,9263970-9264039,9264463-9264498,
9264567-9264692,9265294-9265424,9265549-9265645,
9265858-9266027,9267817-9267874,9268758-9269074
Length = 527
Score = 65.7 bits (153), Expect = 3e-11
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 7/91 (7%)
Frame = +2
Query: 374 APFILLPSPFPKTEFMKAVELQPVLNELMHKVAHDDEFLEQTL-------QNALQVDEFT 532
APF LLP F K + +AVEL P+ NEL+ +V+ D +FL++TL +VD FT
Sbjct: 138 APFALLPMSFSKVYWDQAVELAPLFNELVDRVSLDGDFLQETLASFSLSFSRTKEVDSFT 197
Query: 533 ANLYDIWLKVKNEGISQPISLGMLRSDIMLE 625
L DI K+ + + LG+ RSD M++
Sbjct: 198 GRLLDIHAKMMKLNKKEDVRLGLTRSDYMID 228
>02_04_0076 - 19486360-19488723
Length = 787
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 510 AFCKVCSKNSSSWATLCMSSFKTGCSSTA 424
AF +NSSSW ++ M+S + GC TA
Sbjct: 640 AFRNTSGRNSSSWTSIIMASVENGCPETA 668
>11_04_0305 -
16162063-16162096,16162282-16164365,16165283-16165351,
16168317-16169288,16169548-16169650,16170427-16170509
Length = 1114
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 461 HKVAHDDEFLEQTLQNALQVDEFTANLYDIWL-KVKNEGISQPISLGMLRSDIMLESR 631
H+ +HD LE +L NA++ F L D+W + N+ + P S G S +++ +R
Sbjct: 298 HRSSHDRSVLELSLLNAIKGKNFILVLDDMWTERAWNDFLQIPFSHGGRGSRVIVTTR 355
>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Frame = +2
Query: 374 APFILLPSPFPKT-------EFMKAVELQPVLNELMHKVAHDDEFLEQTLQNAL 514
APF L P P+P T F K +E ++ +M KV D L+ L AL
Sbjct: 1455 APFGLFPRPWPLTVDASEGSRFSKVIEHFRLVGRVMAKVLQDGRLLDLPLSTAL 1508
>11_06_0669 - 26084906-26087350
Length = 814
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +2
Query: 488 LEQTLQNALQVDEFTANLYDIWLKVKN-----EGISQPISLGMLRSDIMLESR 631
LEQ L+ AL F L D+W + + I P+ +G L S I+L SR
Sbjct: 164 LEQKLEQALSRKRFLLVLDDVWYNKDDSQEELQKILFPLKVGALGSKILLTSR 216
>01_01_0019 +
141084-141631,142191-142431,142563-142680,142749-142789,
143114-143146,145028-145082,145179-145339,145450-145719,
146106-146184,146311-146375,146507-146575
Length = 559
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +2
Query: 449 NELMHKVAHDDEFLEQTLQNALQVDEFTANLYDIWLKVKNEGISQPISLGML 604
N ++++ +E LE L ++ F + + +L+V+ EG+ Q S+G L
Sbjct: 361 NSIIYRYLCSEELLEDVLGGKDALNAFRESDLNGYLEVETEGLKQLTSMGSL 412
>03_05_0823 -
27970038-27970258,27970279-27970544,27970608-27970657,
27971272-27971538,27971633-27972001,27972373-27973278
Length = 692
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +2
Query: 419 MKAVELQPVLNELMHKVAHDDEFLEQTLQNALQVDEFTANLYDIWLKVKNEGISQPISLG 598
+KA L+ H A DD F + +AL VD+ L + LK++ ++ I L
Sbjct: 487 VKADSLREFRTPDFHPTASDDNFYLKVQFSALLVDKEKLELCTVRLKIRAVALALRIYLK 546
Query: 599 MLRS 610
L+S
Sbjct: 547 YLQS 550
>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
Length = 1270
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -3
Query: 593 AISVEICPRFSLSTICHTNLL*THLLVE 510
++++ CP+ SL + HT+ L TH++VE
Sbjct: 835 SLNIRNCPKLSLPPMPHTSTL-THIIVE 861
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,228,764
Number of Sequences: 37544
Number of extensions: 256394
Number of successful extensions: 695
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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