Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H11
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28474| Best HMM Match : GSH_synthase (HMM E-Value=3.20001e-40)     103   2e-22
SB_20609| Best HMM Match : Keratin_B2 (HMM E-Value=4)                  29   2.5  
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_19438| Best HMM Match : DEAD (HMM E-Value=7.5e-07)                  27   9.9  

>SB_28474| Best HMM Match : GSH_synthase (HMM E-Value=3.20001e-40)
          Length = 372

 Score =  103 bits (246), Expect = 2e-22
 Identities = 48/115 (41%), Positives = 80/115 (69%)
 Frame = +2

Query: 284 NVIEKAXDWALMHGVGMRDKKHFNKDVIQIAPFILLPSPFPKTEFMKAVELQPVLNELMH 463
           N+   A D+ + +GV  R K   + D ++ APF+L P+P+P+  F +A  +Q   NEL+H
Sbjct: 80  NLAGSAADFLMGNGVLYRSKS--SADQVEHAPFMLFPTPYPRKLFDQAKAVQKDFNELVH 137

Query: 464 KVAHDDEFLEQTLQNALQVDEFTANLYDIWLKVKNEGISQPISLGMLRSDIMLES 628
           KV+ D EFL+++LQ+ + VD+F   +Y+++ +++ EGI+QPISL +LRSD M++S
Sbjct: 138 KVSLDHEFLKESLQSTMAVDKFMGRIYEMYEQIRKEGIAQPISLSLLRSDYMIDS 192


>SB_20609| Best HMM Match : Keratin_B2 (HMM E-Value=4)
          Length = 102

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = -2

Query: 525 SSTCRAFCKVCSKNSSSWATLCMSSFKTGCSSTAFINS 412
           ++T +A C V + N++S AT C+ ++ T   +T ++++
Sbjct: 9   NTTSQAICYVHTYNTTSQATRCVHTYNTTSQATRYVHT 46


>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = -2

Query: 549 MSYKFAVNSST-CRAFCKVCSKNSSSWATLCMSSFKTGCSSTAFINSVFGKGDGNSIN 379
           MSY    N     R     C ++S    T+  S+  + CS   F  +  GK DG  IN
Sbjct: 75  MSYTSGSNHKYYMRCTTSYCYRDSCPGDTVFKSNKWSSCSYDTFYINAIGKSDGQPIN 132


>SB_19438| Best HMM Match : DEAD (HMM E-Value=7.5e-07)
          Length = 391

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = +2

Query: 248 CLQLPL--ENKTLVNVIEKAXDWALMHGV-GMRDKKHFNKDVIQIAPFILLPSPFPKTEF 418
           CL+LP   E + L+  +  +    L+  +  M++    +KDV+ + PF+ +     KT  
Sbjct: 236 CLKLPAIQEKRNLIYSLPTSGGKTLVAEILMMKELLVHHKDVVLVLPFVSIVQEKVKTIT 295

Query: 419 MKAVELQPVLNE 454
             AVEL  V+ E
Sbjct: 296 QFAVELGFVVEE 307


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,240,840
Number of Sequences: 59808
Number of extensions: 309239
Number of successful extensions: 727
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)