Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_H11
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78412-1|CAB01655.1|  490|Caenorhabditis elegans Hypothetical pr...    95   3e-20
Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    31   0.93 
Z78416-1|CAB01682.1|  425|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    30   1.6  
AF293976-1|AAG17881.1|  425|Caenorhabditis elegans CAB-1 protein.      30   1.6  
AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z81056-2|CAB02901.2|  323|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     27   8.7  

>Z78412-1|CAB01655.1|  490|Caenorhabditis elegans Hypothetical
           protein M176.2 protein.
          Length = 490

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 48/123 (39%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
 Frame = +2

Query: 254 QLPLENKTLVNVIEKAXDWALMHGVGMR-DKKHFNKDVIQIAPFILLPSPFPKTEFMKAV 430
           +LPLE+  L  +     DWA  +G+ MR      + +V Q  P  LLPSPFPK  F +AV
Sbjct: 15  RLPLEDDKLNELTADLHDWAHANGLVMRLSTDKLSSEVCQTTPLTLLPSPFPKNVFEEAV 74

Query: 431 ELQPVLNELMHKVAHDDEFLEQTLQNALQVDEFTANLYDIWLKVKNEGISQPISLGMLRS 610
            +Q +   L H +A++ +FL    +N ++ D+FT N+ +I  KVK +G+ QP++L + RS
Sbjct: 75  HIQNLFASLYHFIAYEFDFLIDIHKNVVKTDDFTRNMVEILKKVKAQGLKQPVTLAIQRS 134

Query: 611 DIM 619
           D M
Sbjct: 135 DYM 137


>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 543 YKFAVNSSTCRAFCKVCSKNSSSWATLCMSSFKTGCSSTA 424
           Y  A+ +  C A C +CS +S S ++   +S  + C+ +A
Sbjct: 152 YTTAIKTQYCAATCSLCSSSSDSSSSSSTASTSSSCTDSA 191


>Z78416-1|CAB01682.1|  425|Caenorhabditis elegans Hypothetical
           protein C23H4.1 protein.
          Length = 425

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = +2

Query: 389 LPSPFPKTEFMKAVELQPVLNELMHKVAHDDEFLEQTLQNALQVDEFTANLYDIWLK-VK 565
           +P+ FP  E     E Q  LN+ + ++ ++ E LE     A++  E  A L  +  K V 
Sbjct: 126 VPAQFPNFEQEAEQEHQDELNQWLEQLMNEQELLEPA-NAAVKDAEQKAPLAPVHHKQVA 184

Query: 566 NEGISQPISL-GMLRSDIMLES 628
            +   +P  L  +LR ++MLE+
Sbjct: 185 QKPAQEPFDLDDLLRGELMLEN 206


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/64 (23%), Positives = 24/64 (37%)
 Frame = -2

Query: 516  CRAFCKVCSKNSSSWATLCMSSFKTGCSSTAFINSVFGKGDGNSINGAI*ITSLLKCFLS 337
            C   CK C+KN       C  + +  C        V+   D + ++G   I   ++C   
Sbjct: 1303 CAKMCKKCAKNVQKMCKKCAKNVQKMCKKYGLEVPVYSNDDEHPLDGPHTILHAVQCPKK 1362

Query: 336  LIPT 325
             I T
Sbjct: 1363 FIAT 1366


>AF293976-1|AAG17881.1|  425|Caenorhabditis elegans CAB-1 protein.
          Length = 425

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = +2

Query: 389 LPSPFPKTEFMKAVELQPVLNELMHKVAHDDEFLEQTLQNALQVDEFTANLYDIWLK-VK 565
           +P+ FP  E     E Q  LN+ + ++ ++ E LE     A++  E  A L  +  K V 
Sbjct: 126 VPAQFPNFEQEAEQEHQDELNQWLEQLMNEQELLEPA-NAAVKDAEQKAPLAPVHHKQVA 184

Query: 566 NEGISQPISL-GMLRSDIMLES 628
            +   +P  L  +LR ++MLE+
Sbjct: 185 QKPAQEPFDLDDLLRGELMLEN 206


>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 531 VNSSTCRAFCKVCSKNSSSWATLCMSSFKTGCSST 427
           V + TC A+C++C K  S   T  +  F   C  T
Sbjct: 227 VPTETCGAYCRICLKKYSENDTKSVPRFLFACGHT 261


>Z81056-2|CAB02901.2|  323|Caenorhabditis elegans Hypothetical
           protein F09F3.2 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 552 HMSYKFAVNSSTCRAFCKVCSKNSSSWATLCMS 454
           ++ YKF   +S    F K+C+  + +  T+CMS
Sbjct: 37  YLFYKFVTRASKPSGFQKLCTMKTFTNCTICMS 69


>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
           protein K04B12.1 protein.
          Length = 1764

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +2

Query: 380 FILLPSPFPKTEFMKAVELQPVLNELMHKVAHDDEFLEQTLQNALQVDEFTANLYDIW-L 556
           F+LL S F +       E + V  +L H   H D+F+    Q  +    + A+L  +  L
Sbjct: 7   FLLLISHFLRAVTQPPFETEGVKQKLFHFSGHIDDFIVSRDQQTI----YVASLNRLTSL 62

Query: 557 KVKNEGISQPISLG 598
            + N  I   +SLG
Sbjct: 63  SISNFSIQHEVSLG 76


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +2

Query: 380 FILLPSPFPKTEFMKAVELQPVLNELMHKVAHDDEFLEQTLQNALQVDEFTANLYDIW-L 556
           F+LL S F +       E + V  +L H   H D+F+    Q  +    + A+L  +  L
Sbjct: 7   FLLLISHFLRAVTQPPFETEGVKQKLFHFSGHIDDFIVSRDQQTI----YVASLNRLTSL 62

Query: 557 KVKNEGISQPISLG 598
            + N  I   +SLG
Sbjct: 63  SISNFSIQHEVSLG 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,010,791
Number of Sequences: 27780
Number of extensions: 249095
Number of successful extensions: 727
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)